container.yaml

url: https://biocontainers.pro/tools/gmap-fusion
maintainer: '@vsoch'
description: shpc-registry automated BioContainers addition for gmap-fusion
latest:
  0.4.0--2: sha256:40465100fd9563473496cc6d56e303b77cc691079a934db0e1b65b4a3f677e4f
tags:
  0.4.0--2: sha256:40465100fd9563473496cc6d56e303b77cc691079a934db0e1b65b4a3f677e4f
docker: quay.io/biocontainers/gmap-fusion
aliases:
  GMAP-fusion: /usr/local/bin/GMAP-fusion
  atoiindex: /usr/local/bin/atoiindex
  cmetindex: /usr/local/bin/cmetindex
  cpuid: /usr/local/bin/cpuid
  dbsnp_iit: /usr/local/bin/dbsnp_iit
  ensembl_genes: /usr/local/bin/ensembl_genes
  fa_coords: /usr/local/bin/fa_coords
  get-genome: /usr/local/bin/get-genome
  gff3_genes: /usr/local/bin/gff3_genes
  gff3_introns: /usr/local/bin/gff3_introns
  gff3_splicesites: /usr/local/bin/gff3_splicesites
  gmap.sse42: /usr/local/bin/gmap.sse42
  gmap_build: /usr/local/bin/gmap_build
  gmap_compress: /usr/local/bin/gmap_compress
  gmap_process: /usr/local/bin/gmap_process
  gmap_reassemble: /usr/local/bin/gmap_reassemble
  gmap_uncompress: /usr/local/bin/gmap_uncompress
  gmapindex: /usr/local/bin/gmapindex
  gmapl: /usr/local/bin/gmapl
  gmapl.sse42: /usr/local/bin/gmapl.sse42
  gsnap: /usr/local/bin/gsnap
  gsnap.sse42: /usr/local/bin/gsnap.sse42
  gsnapl: /usr/local/bin/gsnapl
  gsnapl.sse42: /usr/local/bin/gsnapl.sse42
  gtf_genes: /usr/local/bin/gtf_genes
  gtf_introns: /usr/local/bin/gtf_introns
  gtf_splicesites: /usr/local/bin/gtf_splicesites
  gtf_transcript_splicesites: /usr/local/bin/gtf_transcript_splicesites
  gvf_iit: /usr/local/bin/gvf_iit
  iit_dump: /usr/local/bin/iit_dump
  iit_get: /usr/local/bin/iit_get
  iit_store: /usr/local/bin/iit_store
  md_coords: /usr/local/bin/md_coords
  psl_genes: /usr/local/bin/psl_genes
  psl_introns: /usr/local/bin/psl_introns
  psl_splicesites: /usr/local/bin/psl_splicesites
  sam_sort: /usr/local/bin/sam_sort
  snpindex: /usr/local/bin/snpindex
  trindex: /usr/local/bin/trindex
  vcf_iit: /usr/local/bin/vcf_iit
  gmap: /usr/local/bin/gmap
  db_archive: /usr/local/bin/db_archive
  db_checkpoint: /usr/local/bin/db_checkpoint
  db_deadlock: /usr/local/bin/db_deadlock
  db_dump: /usr/local/bin/db_dump
  db_hotbackup: /usr/local/bin/db_hotbackup
  db_load: /usr/local/bin/db_load
  db_log_verify: /usr/local/bin/db_log_verify
  db_printlog: /usr/local/bin/db_printlog
  db_recover: /usr/local/bin/db_recover