container.yaml

url: https://biocontainers.pro/tools/gridss
maintainer: '@vsoch'
description: shpc-registry automated BioContainers addition for gridss
latest:
  2.13.2--h50ea8bc_3: sha256:20edbcb22424f8211452e699afb3175b07c32ac61058b899e7a35c356e84e609
tags:
  2.9.4--0: sha256:2261cbcf0559d820ce5b726b6ba439647fd768055d1c85fd4910dbdf23984dfd
  2.13.2--h20b1175_1: sha256:886fe9d43ff1068edefe4a07ae8a04c061e2f8e8bcfb7708df9126ac24250562
  2.12.2--h270b39a_0: sha256:8dacc8288ad30a811a7159d69d99e04e688f6035cba841008c3e0b6f80aedd1a
  2.11.1--hdfd78af_1: sha256:4fab80066fd2c37f36fadb8e36551e15e85342064c36788b659577f8723f9902
  2.10.2--0: sha256:a5969e410aaa0e33b3da6f4af22230a55fd8f507701598717b8fb30acb788f51
  2.13.2--h50ea8bc_2: sha256:0c2bac7239c7b63052f190fc80cba00f927971a6b37026480f4cfcbcce8636a3
  2.13.2--h50ea8bc_3: sha256:20edbcb22424f8211452e699afb3175b07c32ac61058b899e7a35c356e84e609
docker: quay.io/biocontainers/gridss
aliases:
  AllocateEvidence: /usr/local/bin/AllocateEvidence
  AnnotateInexactHomology: /usr/local/bin/AnnotateInexactHomology
  AnnotateInexactHomologyBedpe: /usr/local/bin/AnnotateInexactHomologyBedpe
  AnnotateReferenceCoverage: /usr/local/bin/AnnotateReferenceCoverage
  AnnotateUntemplatedSequence: /usr/local/bin/AnnotateUntemplatedSequence
  AnnotateVariants: /usr/local/bin/AnnotateVariants
  AssembleBreakends: /usr/local/bin/AssembleBreakends
  CallVariants: /usr/local/bin/CallVariants
  CollectCigarMetrics: /usr/local/bin/CollectCigarMetrics
  CollectFragmentGCMetrics: /usr/local/bin/CollectFragmentGCMetrics
  CollectGridssMetrics: /usr/local/bin/CollectGridssMetrics
  CollectGridssMetricsAndExtractFullReads: /usr/local/bin/CollectGridssMetricsAndExtractFullReads
  CollectGridssMetricsAndExtractSVReads: /usr/local/bin/CollectGridssMetricsAndExtractSVReads
  CollectIdsvMetrics: /usr/local/bin/CollectIdsvMetrics
  CollectMapqMetrics: /usr/local/bin/CollectMapqMetrics
  CollectStructuralVariantReadMetrics: /usr/local/bin/CollectStructuralVariantReadMetrics
  CollectTagMetrics: /usr/local/bin/CollectTagMetrics
  ComputeSamTags: /usr/local/bin/ComputeSamTags
  ExtractFullReads: /usr/local/bin/ExtractFullReads
  ExtractSVReads: /usr/local/bin/ExtractSVReads
  GeneratePonBedpe: /usr/local/bin/GeneratePonBedpe
  IdentifyVariants: /usr/local/bin/IdentifyVariants
  IndexedExtractFullReads: /usr/local/bin/IndexedExtractFullReads
  ReportThresholdCoverage: /usr/local/bin/ReportThresholdCoverage
  SoftClipsToSplitReads: /usr/local/bin/SoftClipsToSplitReads
  gridss: /usr/local/bin/gridss
  gridss_annotate_insertions_repeatmaster: /usr/local/bin/gridss_annotate_insertions_repeatmaster
  gridss_somatic_filter: /usr/local/bin/gridss_somatic_filter
  pandoc-citeproc: /usr/local/bin/pandoc-citeproc
  qualfa2fq.pl: /usr/local/bin/qualfa2fq.pl
  xa2multi.pl: /usr/local/bin/xa2multi.pl
  bwa: /usr/local/bin/bwa
  pandoc: /usr/local/bin/pandoc
  jaotc: /usr/local/bin/jaotc
  aserver: /usr/local/bin/aserver
  jdeprscan: /usr/local/bin/jdeprscan
  jhsdb: /usr/local/bin/jhsdb
  jimage: /usr/local/bin/jimage