/
container.yaml
168 lines (168 loc) · 8.13 KB
/
container.yaml
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url: https://biocontainers.pro/tools/hapsolo
maintainer: '@vsoch'
description: singularity registry hpc automated addition for hapsolo
latest:
2021.10.09--py27hdfd78af_0: sha256:6f18656313b26c681c746bbaeea52984afe7467b2171c48fa3be467a9d53c213
tags:
2021.10.09--py27hdfd78af_0: sha256:6f18656313b26c681c746bbaeea52984afe7467b2171c48fa3be467a9d53c213
docker: quay.io/biocontainers/hapsolo
aliases:
PF00225_full.blocks.txt: /usr/local/bin/PF00225_full.blocks.txt
PF00225_seed.blocks.txt: /usr/local/bin/PF00225_seed.blocks.txt
SplicedAlignment.pm: /usr/local/bin/SplicedAlignment.pm
aa2nonred.pl: /usr/local/bin/aa2nonred.pl
add_name_to_gff3.pl: /usr/local/bin/add_name_to_gff3.pl
aln2wig: /usr/local/bin/aln2wig
augustify.py: /usr/local/bin/augustify.py
augustus2browser.pl: /usr/local/bin/augustus2browser.pl
augustus2gbrowse.pl: /usr/local/bin/augustus2gbrowse.pl
autoAug.pl: /usr/local/bin/autoAug.pl
autoAugPred.pl: /usr/local/bin/autoAugPred.pl
autoAugTrain.pl: /usr/local/bin/autoAugTrain.pl
bam2wig: /usr/local/bin/bam2wig
bamToWig.py: /usr/local/bin/bamToWig.py
bedgraph2wig.pl: /usr/local/bin/bedgraph2wig.pl
blat2gbrowse.pl: /usr/local/bin/blat2gbrowse.pl
blat2hints.pl: /usr/local/bin/blat2hints.pl
block2prfl.pl: /usr/local/bin/block2prfl.pl
braker.pl: /usr/local/bin/braker.pl
cdbfasta: /usr/local/bin/cdbfasta
cdbyank: /usr/local/bin/cdbyank
cegma2gff.pl: /usr/local/bin/cegma2gff.pl
checkParamArchive.pl: /usr/local/bin/checkParamArchive.pl
checkUTR: /usr/local/bin/checkUTR
cleanDOSfasta.pl: /usr/local/bin/cleanDOSfasta.pl
clusterAndSplitGenes.pl: /usr/local/bin/clusterAndSplitGenes.pl
compare_masking.pl: /usr/local/bin/compare_masking.pl
compileSpliceCands: /usr/local/bin/compileSpliceCands
computeFlankingRegion.pl: /usr/local/bin/computeFlankingRegion.pl
createAugustusJoblist.pl: /usr/local/bin/createAugustusJoblist.pl
del_from_prfl.pl: /usr/local/bin/del_from_prfl.pl
evalCGP.pl: /usr/local/bin/evalCGP.pl
eval_dualdecomp.pl: /usr/local/bin/eval_dualdecomp.pl
eval_multi_gtf.pl: /usr/local/bin/eval_multi_gtf.pl
executeTestCGP.py: /usr/local/bin/executeTestCGP.py
exonerate2hints.pl: /usr/local/bin/exonerate2hints.pl
exoniphyDb2hints.pl: /usr/local/bin/exoniphyDb2hints.pl
extractAnno.py: /usr/local/bin/extractAnno.py
extractTranscriptEnds.pl: /usr/local/bin/extractTranscriptEnds.pl
filter-ppx.pl: /usr/local/bin/filter-ppx.pl
filterGenemark.pl: /usr/local/bin/filterGenemark.pl
filterGenes.pl: /usr/local/bin/filterGenes.pl
filterGenesIn.pl: /usr/local/bin/filterGenesIn.pl
filterGenesIn_mRNAname.pl: /usr/local/bin/filterGenesIn_mRNAname.pl
filterGenesOut_mRNAname.pl: /usr/local/bin/filterGenesOut_mRNAname.pl
filterInFrameStopCodons.pl: /usr/local/bin/filterInFrameStopCodons.pl
filterIntronsFindStrand.pl: /usr/local/bin/filterIntronsFindStrand.pl
filterMaf.pl: /usr/local/bin/filterMaf.pl
filterPSL.pl: /usr/local/bin/filterPSL.pl
filterShrimp.pl: /usr/local/bin/filterShrimp.pl
filterSpliceHints.pl: /usr/local/bin/filterSpliceHints.pl
findGffNamesInFasta.pl: /usr/local/bin/findGffNamesInFasta.pl
fix_in_frame_stop_codon_genes.py: /usr/local/bin/fix_in_frame_stop_codon_genes.py
fix_joingenes_gtf.pl: /usr/local/bin/fix_joingenes_gtf.pl
gbSmallDNA2gff.pl: /usr/local/bin/gbSmallDNA2gff.pl
gbrowse.conf: /usr/local/bin/gbrowse.conf
gbrowseold2gff3.pl: /usr/local/bin/gbrowseold2gff3.pl
generate_plot: /usr/local/bin/generate_plot
generate_plot.py: /usr/local/bin/generate_plot.py
getAnnoFasta.pl: /usr/local/bin/getAnnoFasta.pl
getAnnoFastaFromJoingenes.py: /usr/local/bin/getAnnoFastaFromJoingenes.py
getLinesMatching.pl: /usr/local/bin/getLinesMatching.pl
getSeq: /usr/local/bin/getSeq
get_loci_from_gb.pl: /usr/local/bin/get_loci_from_gb.pl
gff2gbSmallDNA.pl: /usr/local/bin/gff2gbSmallDNA.pl
gff2ps_mycustom: /usr/local/bin/gff2ps_mycustom
gffGetmRNA.pl: /usr/local/bin/gffGetmRNA.pl
gp2othergp.pl: /usr/local/bin/gp2othergp.pl
gtf2aa.pl: /usr/local/bin/gtf2aa.pl
gtf2gff.pl: /usr/local/bin/gtf2gff.pl
gth2gtf.pl: /usr/local/bin/gth2gtf.pl
hal2maf_split.pl: /usr/local/bin/hal2maf_split.pl
hapsolo.py: /usr/local/bin/hapsolo.py
helpMod.pm: /usr/local/bin/helpMod.pm
icarus.py: /usr/local/bin/icarus.py
joinPeptides.pl: /usr/local/bin/joinPeptides.pl
join_aug_pred.pl: /usr/local/bin/join_aug_pred.pl
join_mult_hints.pl: /usr/local/bin/join_mult_hints.pl
load2sqlitedb: /usr/local/bin/load2sqlitedb
lp_solve: /usr/local/bin/lp_solve
maf2conswig.pl: /usr/local/bin/maf2conswig.pl
makeMatchLists.pl: /usr/local/bin/makeMatchLists.pl
makeUtrTrainingSet.pl: /usr/local/bin/makeUtrTrainingSet.pl
maskNregions.pl: /usr/local/bin/maskNregions.pl
merge_masking.pl: /usr/local/bin/merge_masking.pl
metaquast: /usr/local/bin/metaquast
metaquast.py: /usr/local/bin/metaquast.py
moveParameters.pl: /usr/local/bin/moveParameters.pl
msa2prfl.pl: /usr/local/bin/msa2prfl.pl
new_species.pl: /usr/local/bin/new_species.pl
opt_init_and_term_probs.pl: /usr/local/bin/opt_init_and_term_probs.pl
optimize_augustus.pl: /usr/local/bin/optimize_augustus.pl
parseSim4Output.pl: /usr/local/bin/parseSim4Output.pl
partition_gtf2gb.pl: /usr/local/bin/partition_gtf2gb.pl
pasapolyA2hints.pl: /usr/local/bin/pasapolyA2hints.pl
peptides2alternatives.pl: /usr/local/bin/peptides2alternatives.pl
peptides2hints.pl: /usr/local/bin/peptides2hints.pl
phastconsDB2hints.pl: /usr/local/bin/phastconsDB2hints.pl
polyA2hints.pl: /usr/local/bin/polyA2hints.pl
pp_simScore: /usr/local/bin/pp_simScore
preprocessfasta.py: /usr/local/bin/preprocessfasta.py
prints2prfl.pl: /usr/local/bin/prints2prfl.pl
pslMap.pl: /usr/local/bin/pslMap.pl
quast: /usr/local/bin/quast
quast-download-busco: /usr/local/bin/quast-download-busco
quast-download-gridss: /usr/local/bin/quast-download-gridss
quast-download-silva: /usr/local/bin/quast-download-silva
quast-lg.py: /usr/local/bin/quast-lg.py
quast.py: /usr/local/bin/quast.py
randomSplit.pl: /usr/local/bin/randomSplit.pl
retroDB2hints.pl: /usr/local/bin/retroDB2hints.pl
rmRedundantHints.pl: /usr/local/bin/rmRedundantHints.pl
runAllSim4.pl: /usr/local/bin/runAllSim4.pl
run_BUSCO.py: /usr/local/bin/run_BUSCO.py
run_busco: /usr/local/bin/run_busco
samMap.pl: /usr/local/bin/samMap.pl
scipiogff2gff.pl: /usr/local/bin/scipiogff2gff.pl
setStopCodonFreqs.pl: /usr/local/bin/setStopCodonFreqs.pl
simpleFastaHeaders.pl: /usr/local/bin/simpleFastaHeaders.pl
simplifyFastaHeaders.pl: /usr/local/bin/simplifyFastaHeaders.pl
splitMfasta.pl: /usr/local/bin/splitMfasta.pl
split_wiggle.pl: /usr/local/bin/split_wiggle.pl
summarizeACGTcontent.pl: /usr/local/bin/summarizeACGTcontent.pl
transMap2hints.pl: /usr/local/bin/transMap2hints.pl
uniquePeptides.pl: /usr/local/bin/uniquePeptides.pl
utrgff2gbrowse.pl: /usr/local/bin/utrgff2gbrowse.pl
utrrnaseq: /usr/local/bin/utrrnaseq
webserver-results.head: /usr/local/bin/webserver-results.head
webserver-results.tail: /usr/local/bin/webserver-results.tail
weedMaf.pl: /usr/local/bin/weedMaf.pl
wig2hints.pl: /usr/local/bin/wig2hints.pl
wigchoose.pl: /usr/local/bin/wigchoose.pl
writeResultsPage.pl: /usr/local/bin/writeResultsPage.pl
yaml2gff.1.4.pl: /usr/local/bin/yaml2gff.1.4.pl
augustus: /usr/local/bin/augustus
bam2hints: /usr/local/bin/bam2hints
etraining: /usr/local/bin/etraining
fastBlockSearch: /usr/local/bin/fastBlockSearch
filterBam: /usr/local/bin/filterBam
gtf2bed.pl: /usr/local/bin/gtf2bed.pl
homGeneMapping: /usr/local/bin/homGeneMapping
joingenes: /usr/local/bin/joingenes
prepareAlign: /usr/local/bin/prepareAlign
circos: /usr/local/bin/circos
circos.exe: /usr/local/bin/circos.exe
compile.bat: /usr/local/bin/compile.bat
compile.make: /usr/local/bin/compile.make
gddiag: /usr/local/bin/gddiag
glimmerhmm: /usr/local/bin/glimmerhmm
glimmhmm.pl: /usr/local/bin/glimmhmm.pl
list.modules: /usr/local/bin/list.modules
test.modules: /usr/local/bin/test.modules
trainGlimmerHMM: /usr/local/bin/trainGlimmerHMM
blat: /usr/local/bin/blat
twoBitInfo: /usr/local/bin/twoBitInfo
faToTwoBit: /usr/local/bin/faToTwoBit
config_data: /usr/local/bin/config_data
bamtools: /usr/local/bin/bamtools
mapview: /usr/local/bin/mapview