/
container.yaml
82 lines (82 loc) · 3.61 KB
/
container.yaml
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url: https://biocontainers.pro/tools/neoloop
maintainer: '@vsoch'
description: singularity registry hpc automated addition for neoloop
latest:
0.4.3.post2--pyhdfd78af_0: sha256:71f2acb1330cd61786bae1308b214681cc455bb970e22b83e18b9eae9035ead1
tags:
0.4.3.post2--pyhdfd78af_0: sha256:71f2acb1330cd61786bae1308b214681cc455bb970e22b83e18b9eae9035ead1
docker: quay.io/biocontainers/neoloop
aliases:
add_prefix_to_cool.py: /usr/local/bin/add_prefix_to_cool.py
assemble-complexSVs: /usr/local/bin/assemble-complexSVs
calculate-cnv: /usr/local/bin/calculate-cnv
calfea: /usr/local/bin/calfea
cmtime: /usr/local/bin/cmtime
correct-cnv: /usr/local/bin/correct-cnv
domaincaller: /usr/local/bin/domaincaller
get_gprof: /usr/local/bin/get_gprof
h5fuse.sh: /usr/local/bin/h5fuse.sh
hitad: /usr/local/bin/hitad
ib_acme: /usr/local/bin/ib_acme
ibv_asyncwatch: /usr/local/bin/ibv_asyncwatch
ibv_devices: /usr/local/bin/ibv_devices
ibv_devinfo: /usr/local/bin/ibv_devinfo
ibv_rc_pingpong: /usr/local/bin/ibv_rc_pingpong
ibv_srq_pingpong: /usr/local/bin/ibv_srq_pingpong
ibv_uc_pingpong: /usr/local/bin/ibv_uc_pingpong
ibv_ud_pingpong: /usr/local/bin/ibv_ud_pingpong
ibv_xsrq_pingpong: /usr/local/bin/ibv_xsrq_pingpong
isort: /usr/local/bin/isort
isort-identify-imports: /usr/local/bin/isort-identify-imports
mckey: /usr/local/bin/mckey
neoloop-caller: /usr/local/bin/neoloop-caller
neotad-caller: /usr/local/bin/neotad-caller
output-DI: /usr/local/bin/output-DI
plot-cnv: /usr/local/bin/plot-cnv
prepare-SV-breakpoints.py: /usr/local/bin/prepare-SV-breakpoints.py
protoc-24.3.0: /usr/local/bin/protoc-24.3.0
pyensembl: /usr/local/bin/pyensembl
pylint: /usr/local/bin/pylint
pylint-config: /usr/local/bin/pylint-config
pyreverse: /usr/local/bin/pyreverse
rcopy: /usr/local/bin/rcopy
rdma_client: /usr/local/bin/rdma_client
rdma_server: /usr/local/bin/rdma_server
rdma_xclient: /usr/local/bin/rdma_xclient
rdma_xserver: /usr/local/bin/rdma_xserver
riostream: /usr/local/bin/riostream
rping: /usr/local/bin/rping
rstream: /usr/local/bin/rstream
searchSVbyGene: /usr/local/bin/searchSVbyGene
segment-cnv: /usr/local/bin/segment-cnv
simulate-cnv: /usr/local/bin/simulate-cnv
symilar: /usr/local/bin/symilar
tad-plot: /usr/local/bin/tad-plot
ucmatose: /usr/local/bin/ucmatose
udaddy: /usr/local/bin/udaddy
udpong: /usr/local/bin/udpong
io_demo: /usr/local/bin/io_demo
ucx_info: /usr/local/bin/ucx_info
ucx_perftest: /usr/local/bin/ucx_perftest
ucx_read_profile: /usr/local/bin/ucx_read_profile
dask: /usr/local/bin/dask
elastipubsub5: /usr/local/bin/elastipubsub5
mqtt5_app: /usr/local/bin/mqtt5_app
mqtt5_canary: /usr/local/bin/mqtt5_canary
mqtt5canary: /usr/local/bin/mqtt5canary
produce_x_platform_fuzz_corpus: /usr/local/bin/produce_x_platform_fuzz_corpus
run_x_platform_fuzz_corpus: /usr/local/bin/run_x_platform_fuzz_corpus
cooler: /usr/local/bin/cooler
bam2pairs: /usr/local/bin/bam2pairs
column_remover.pl: /usr/local/bin/column_remover.pl
duplicate_header_remover.pl: /usr/local/bin/duplicate_header_remover.pl
fragment_4dnpairs.pl: /usr/local/bin/fragment_4dnpairs.pl
juicer_shortform2pairs.pl: /usr/local/bin/juicer_shortform2pairs.pl
merge-pairs.sh: /usr/local/bin/merge-pairs.sh
merged_nodup2pairs.pl: /usr/local/bin/merged_nodup2pairs.pl
old_merged_nodup2pairs.pl: /usr/local/bin/old_merged_nodup2pairs.pl
pairix: /usr/local/bin/pairix
pairs_merger: /usr/local/bin/pairs_merger
process_merged_nodup.sh: /usr/local/bin/process_merged_nodup.sh
process_old_merged_nodup.sh: /usr/local/bin/process_old_merged_nodup.sh
streamer_1d: /usr/local/bin/streamer_1d