/
container.yaml
124 lines (124 loc) · 5.91 KB
/
container.yaml
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url: https://biocontainers.pro/tools/pgcgap
maintainer: '@vsoch'
description: shpc-registry automated BioContainers addition for pgcgap
latest:
1.0.35--pl5321hdfd78af_1: sha256:7611739117dca3af89b757ddce26101eb10bfa9e3dbf788abfdbcee2c9167fd3
tags:
1.0.9--2: sha256:2e7bb4db86b7d6a1adac57195bfa7a22e0d37ec64dbe592cd07bb4b987196183
1.0.35--pl5321hdfd78af_0: sha256:16b7429e5beac461255299ee58e2c2c7cf154e1d1c46d915c935abde2783eba8
1.0.35--pl5321hdfd78af_1: sha256:7611739117dca3af89b757ddce26101eb10bfa9e3dbf788abfdbcee2c9167fd3
docker: quay.io/biocontainers/pgcgap
aliases:
COG.pl: /usr/local/bin/COG.pl
Plot_ANIheatmap.R: /usr/local/bin/Plot_ANIheatmap.R
Plot_COG.R: /usr/local/bin/Plot_COG.R
Plot_COG_Abundance.R: /usr/local/bin/Plot_COG_Abundance.R
Plot_MashHeatmap.R: /usr/local/bin/Plot_MashHeatmap.R
_gdlib-config: /usr/local/bin/_gdlib-config
abricate: /usr/local/bin/abricate
abricate-get_db: /usr/local/bin/abricate-get_db
abyss-stack-size: /usr/local/bin/abyss-stack-size
alignGFA: /usr/local/bin/alignGFA
bogart: /usr/local/bin/bogart
bogus: /usr/local/bin/bogus
canu: /usr/local/bin/canu
canu-time: /usr/local/bin/canu-time
correctOverlaps: /usr/local/bin/correctOverlaps
create_pan_genome: /usr/local/bin/create_pan_genome
create_pan_genome_plots.R: /usr/local/bin/create_pan_genome_plots.R
dumpBlob: /usr/local/bin/dumpBlob
edalign: /usr/local/bin/edalign
errorEstimate: /usr/local/bin/errorEstimate
extract_proteome_from_gff: /usr/local/bin/extract_proteome_from_gff
falconsense: /usr/local/bin/falconsense
fastme: /usr/local/bin/fastme
filterCorrectionLayouts: /usr/local/bin/filterCorrectionLayouts
filterCorrectionOverlaps: /usr/local/bin/filterCorrectionOverlaps
findErrors: /usr/local/bin/findErrors
findErrors-Dump: /usr/local/bin/findErrors-Dump
fmplot.py: /usr/local/bin/fmplot.py
gawk-5.0.1: /usr/local/bin/gawk-5.0.1
generateCorrectionLayouts: /usr/local/bin/generateCorrectionLayouts
get_ANImatrix.pl: /usr/local/bin/get_ANImatrix.pl
get_Mash_Matrix.pl: /usr/local/bin/get_Mash_Matrix.pl
get_flag_relative_abundances_table.pl: /usr/local/bin/get_flag_relative_abundances_table.pl
gubbins: /usr/local/bin/gubbins
iterative_cdhit: /usr/local/bin/iterative_cdhit
loadCorrectedReads: /usr/local/bin/loadCorrectedReads
loadErates: /usr/local/bin/loadErates
loadTrimmedReads: /usr/local/bin/loadTrimmedReads
mergeRanges: /usr/local/bin/mergeRanges
meryl-import: /usr/local/bin/meryl-import
meryl-lookup: /usr/local/bin/meryl-lookup
mhapConvert: /usr/local/bin/mhapConvert
mmapConvert: /usr/local/bin/mmapConvert
orthofinder: /usr/local/bin/orthofinder
ovStoreBucketizer: /usr/local/bin/ovStoreBucketizer
ovStoreBuild: /usr/local/bin/ovStoreBuild
ovStoreConfig: /usr/local/bin/ovStoreConfig
ovStoreDump: /usr/local/bin/ovStoreDump
ovStoreIndexer: /usr/local/bin/ovStoreIndexer
ovStoreSorter: /usr/local/bin/ovStoreSorter
ovStoreStats: /usr/local/bin/ovStoreStats
overlapAlign: /usr/local/bin/overlapAlign
overlapConvert: /usr/local/bin/overlapConvert
overlapImport: /usr/local/bin/overlapImport
overlapInCore: /usr/local/bin/overlapInCore
overlapInCorePartition: /usr/local/bin/overlapInCorePartition
overlapPair: /usr/local/bin/overlapPair
pal2nal.pl: /usr/local/bin/pal2nal.pl
pan_genome_assembly_statistics: /usr/local/bin/pan_genome_assembly_statistics
pan_genome_core_alignment: /usr/local/bin/pan_genome_core_alignment
pan_genome_post_analysis: /usr/local/bin/pan_genome_post_analysis
pan_genome_reorder_spreadsheet: /usr/local/bin/pan_genome_reorder_spreadsheet
parallel_all_against_all_blastp: /usr/local/bin/parallel_all_against_all_blastp
pgcgap: /usr/local/bin/pgcgap
plot_3Dpie.R: /usr/local/bin/plot_3Dpie.R
prefixEditDistance-matchLimitGenerate: /usr/local/bin/prefixEditDistance-matchLimitGenerate
protein_alignment_from_nucleotides: /usr/local/bin/protein_alignment_from_nucleotides
query_pan_genome: /usr/local/bin/query_pan_genome
roary: /usr/local/bin/roary
roary-create_pan_genome_plots.R: /usr/local/bin/roary-create_pan_genome_plots.R
roary-pan_genome_reorder_spreadsheet: /usr/local/bin/roary-pan_genome_reorder_spreadsheet
roary-query_pan_genome: /usr/local/bin/roary-query_pan_genome
roary-unique_genes_per_sample: /usr/local/bin/roary-unique_genes_per_sample
run_gubbins.py: /usr/local/bin/run_gubbins.py
sequence: /usr/local/bin/sequence
sickle: /usr/local/bin/sickle
snippy: /usr/local/bin/snippy
snippy-clean_full_aln: /usr/local/bin/snippy-clean_full_aln
snippy-core: /usr/local/bin/snippy-core
snippy-multi: /usr/local/bin/snippy-multi
snippy-vcf_extract_subs: /usr/local/bin/snippy-vcf_extract_subs
snippy-vcf_report: /usr/local/bin/snippy-vcf_report
snippy-vcf_to_tab: /usr/local/bin/snippy-vcf_to_tab
splitHaplotype: /usr/local/bin/splitHaplotype
splitReads: /usr/local/bin/splitReads
sqStoreCreate: /usr/local/bin/sqStoreCreate
sqStoreCreatePartition: /usr/local/bin/sqStoreCreatePartition
sqStoreDumpFASTQ: /usr/local/bin/sqStoreDumpFASTQ
sqStoreDumpMetaData: /usr/local/bin/sqStoreDumpMetaData
tgStoreCompress: /usr/local/bin/tgStoreCompress
tgStoreDump: /usr/local/bin/tgStoreDump
tgStoreFilter: /usr/local/bin/tgStoreFilter
tgStoreLoad: /usr/local/bin/tgStoreLoad
tgTigDisplay: /usr/local/bin/tgTigDisplay
transfer_annotation_to_groups: /usr/local/bin/transfer_annotation_to_groups
triangle2list.pl: /usr/local/bin/triangle2list.pl
trimReads: /usr/local/bin/trimReads
utgcns: /usr/local/bin/utgcns
vcfnormalizesvs: /usr/local/bin/vcfnormalizesvs
vcfnull2ref: /usr/local/bin/vcfnull2ref
vcfunphase: /usr/local/bin/vcfunphase
wtdbgConvert: /usr/local/bin/wtdbgConvert
yapp: /usr/local/bin/yapp
cal: /usr/local/bin/cal
chmem: /usr/local/bin/chmem
choom: /usr/local/bin/choom
chrt: /usr/local/bin/chrt
col: /usr/local/bin/col
colcrt: /usr/local/bin/colcrt
colrm: /usr/local/bin/colrm
column: /usr/local/bin/column
dmesg: /usr/local/bin/dmesg
eject: /usr/local/bin/eject