/
container.yaml
75 lines (75 loc) · 3.7 KB
/
container.yaml
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url: https://biocontainers.pro/tools/reparation_blast
maintainer: '@vsoch'
description: shpc-registry automated BioContainers addition for reparation_blast
latest:
1.0.9--pl5321hdfd78af_3: sha256:6852b3b69b532039a5d674115b9cbfd2953f6479cf187bcc769e2d899fcbc288
tags:
v1.0.7--pl526_1: sha256:1b24f4b95d9ddd8d1e4f9888493d05a2ba9d0b100955dd31fff00707d4a605bd
1.0.9--pl5321hdfd78af_3: sha256:6852b3b69b532039a5d674115b9cbfd2953f6479cf187bcc769e2d899fcbc288
docker: quay.io/biocontainers/reparation_blast
aliases:
anomaly: /usr/local/bin/anomaly
build-fixed: /usr/local/bin/build-fixed
build-icm: /usr/local/bin/build-icm
counts_in_region: /usr/local/bin/counts_in_region
crossmap: /usr/local/bin/crossmap
cs: /usr/local/bin/cs
entropy-profile: /usr/local/bin/entropy-profile
entropy-score: /usr/local/bin/entropy-score
extract: /usr/local/bin/extract
fasta_clipping_histogram.pl: /usr/local/bin/fasta_clipping_histogram.pl
fasta_formatter: /usr/local/bin/fasta_formatter
fasta_nucleotide_changer: /usr/local/bin/fasta_nucleotide_changer
fastq_masker: /usr/local/bin/fastq_masker
fastq_quality_boxplot_graph.sh: /usr/local/bin/fastq_quality_boxplot_graph.sh
fastq_quality_converter: /usr/local/bin/fastq_quality_converter
fastq_quality_filter: /usr/local/bin/fastq_quality_filter
fastq_quality_trimmer: /usr/local/bin/fastq_quality_trimmer
fastq_to_fasta: /usr/local/bin/fastq_to_fasta
fastx_artifacts_filter: /usr/local/bin/fastx_artifacts_filter
fastx_barcode_splitter.pl: /usr/local/bin/fastx_barcode_splitter.pl
fastx_clipper: /usr/local/bin/fastx_clipper
fastx_collapser: /usr/local/bin/fastx_collapser
fastx_nucleotide_distribution_graph.sh: /usr/local/bin/fastx_nucleotide_distribution_graph.sh
fastx_nucleotide_distribution_line_graph.sh: /usr/local/bin/fastx_nucleotide_distribution_line_graph.sh
fastx_quality_stats: /usr/local/bin/fastx_quality_stats
fastx_renamer: /usr/local/bin/fastx_renamer
fastx_reverse_complement: /usr/local/bin/fastx_reverse_complement
fastx_trimmer: /usr/local/bin/fastx_trimmer
fastx_uncollapser: /usr/local/bin/fastx_uncollapser
findjuncs: /usr/local/bin/findjuncs
g3-from-scratch.csh: /usr/local/bin/g3-from-scratch.csh
g3-from-training.csh: /usr/local/bin/g3-from-training.csh
g3-iterated.csh: /usr/local/bin/g3-iterated.csh
get-motif-counts.awk: /usr/local/bin/get-motif-counts.awk
get_count_vectors: /usr/local/bin/get_count_vectors
gff_parent_types: /usr/local/bin/gff_parent_types
glim-diff.awk: /usr/local/bin/glim-diff.awk
glimmer3: /usr/local/bin/glimmer3
long-orfs: /usr/local/bin/long-orfs
make_wiggle: /usr/local/bin/make_wiggle
match-list-col.awk: /usr/local/bin/match-list-col.awk
metagene: /usr/local/bin/metagene
multi-extract: /usr/local/bin/multi-extract
not-acgt.awk: /usr/local/bin/not-acgt.awk
phase_by_size: /usr/local/bin/phase_by_size
psite: /usr/local/bin/psite
reformat_transcripts: /usr/local/bin/reformat_transcripts
reparation.pl: /usr/local/bin/reparation.pl
score-fixed: /usr/local/bin/score-fixed
slidejuncs: /usr/local/bin/slidejuncs
start-codon-distrib: /usr/local/bin/start-codon-distrib
test_table_equality: /usr/local/bin/test_table_equality
uncovered: /usr/local/bin/uncovered
upstream-coords.awk: /usr/local/bin/upstream-coords.awk
window-acgt: /usr/local/bin/window-acgt
certtool: /usr/local/bin/certtool
gnutls-cli: /usr/local/bin/gnutls-cli
gnutls-cli-debug: /usr/local/bin/gnutls-cli-debug
gnutls-serv: /usr/local/bin/gnutls-serv
nettle-hash: /usr/local/bin/nettle-hash
nettle-lfib-stream: /usr/local/bin/nettle-lfib-stream
nettle-pbkdf2: /usr/local/bin/nettle-pbkdf2
ocsptool: /usr/local/bin/ocsptool
pkcs1-conv: /usr/local/bin/pkcs1-conv
psktool: /usr/local/bin/psktool