forked from jwkvam/bowtie
-
Notifications
You must be signed in to change notification settings - Fork 0
/
Dockerfile
28 lines (21 loc) · 798 Bytes
/
Dockerfile
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
FROM debian:stable
LABEL maintainer="jwkvam@gmail.com"
ENV FLIT_ROOT_INSTALL 1
ENV LANG=C.UTF-8 LC_ALL=C.UTF-8
RUN apt-get update --fix-missing && \
apt-get install -y --no-install-recommends curl bzip2 ca-certificates git && \
apt-get clean && rm -rf /var/lib/apt/lists/*
# miniconda archive
# https://repo.continuum.io/miniconda/
RUN echo "export PATH=/opt/conda/bin:$PATH" > /etc/profile.d/conda.sh && \
curl -L https://repo.continuum.io/miniconda/Miniconda3-4.3.31-Linux-x86_64.sh -o ~/miniconda.sh && \
/bin/bash ~/miniconda.sh -b -p /opt/conda && \
rm ~/miniconda.sh
ENV PATH /opt/conda/bin:$PATH
RUN conda config --add channels conda-forge
RUN conda install -y yarn virtualenv
RUN pip install flit
WORKDIR /bowtie
COPY . /bowtie
RUN flit install -s
WORKDIR /work