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_pkgdown.yml
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/
_pkgdown.yml
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destination: docs
template:
params:
bootswatch: sandstone
reference:
- title: InfectionTrees
desc: General package information
contents:
- matches("InfectionTrees")
- title: Data
desc: Data included in package
contents:
- starts_with("tb_clean")
- title: everything
contents:
- matches(".*")
articles:
- title: Get started
desc: Get going
navbar: ~
contents: #this order
- 'getting-started'
- title: The model
desc: Learn about our model
contents: #this order
- 'not-built-vignettes/model-overview'
- 'not-built-vignettes/multiple-outside-transmissions-model'
- 'not-built-vignettes/sampling-mc-trees'
- 'not-built-vignettes/sampling-enough-mc-trees'
- title: Simulations
desc: Simulate data and fit the models
contents:
- 'not-built-vignettes/base-binary-simulations'
- 'not-built-vignettes/base-general-simulations'
- 'not-built-vignettes/multiple-outside-binary-simulations'
- 'not-built-vignettes/simulations-enough-mc-trees'
- title: Tuberculosis in MD
desc: Use our model on real data
contents:
- 'not-built-vignettes/tb-eda'
- 'not-built-vignettes/tb-data-base'
- 'not-built-vignettes/tb-data-vis'
- title: Reproducing results
desc: Run it yourself
contents:
- 'not-built-vignettes/reproduce-revised-paper-results'
- title: Everything
desc: All articles
contents:
- matches(".*")