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DESCRIPTION
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DESCRIPTION
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Package: RnaSeqSampleSize
Type: Package
Title: RnaSeqSampleSize
Version: 2.5.1
Date: 2021-12-02
Authors@R: c(person("Shilin Zhao", "Developer", role = c("aut", "cre"),
email = "zhaoshilin@gmail.com"),
person("Chung-I Li", role = "aut"),
person("Yan Guo", role = "aut"),
person("Quanhu Sheng", role = "aut"),
person("Yu Shyr",role = "aut"))
Description: RnaSeqSampleSize package provides a sample size calculation method
based on negative binomial model and the exact test for assessing
differential expression analysis of RNA-seq data. It controls FDR for
multiple testing and utilizes the average read count and dispersion
distributions from real data to estimate a more reliable sample size.
It is also equipped with several unique features, including estimation for
interested genes or pathway, power curve visualization, and parameter
optimization.
License: GPL (>= 2)
LazyLoad: yes
Depends:
R (>= 4.0.0),
ggplot2,
RnaSeqSampleSizeData
Imports:
biomaRt,edgeR,heatmap3,matlab,KEGGREST,methods,grDevices, graphics, stats,
Rcpp (>= 0.11.2),recount,ggpubr,SummarizedExperiment,tidyr,dplyr,tidyselect,utils
LinkingTo: Rcpp
VignetteBuilder: knitr
Suggests:
BiocStyle,
knitr,
testthat
biocViews: ImmunoOncology, ExperimentalDesign, Sequencing, RNASeq, GeneExpression,
DifferentialExpression
RoxygenNote: 7.1.2
Encoding: UTF-8