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The tutorial codes cannot be run (TestSoftPowers) #130
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Unfortunately I am not able to reproduce your error. Are you able to run this on any dataset? Based on the error message it looks like it could be a multithreading issue. |
I used a Mac (Rstudio) and I have also tried in a Linux environment with pure R and the problem was solved. However, I am not able to reproduce the plot shown in the tutorial even though I have used the same seed. The power was chosen at 8, rather than the 9 shown in the tutorial. |
Glad you were able to run the code. Just for your information, I don't re-generate the tutorial figures with each update, and at this point they are a few versions out of date so I am not surprised that the images you generate are not the exact same as the figures on the tutorial. |
Sure. Should I assume the current code is always better than the previous version (at least when I use the default parameters)? I would also like to know if you are aware of the following warning and how to solve it: This is shown when I execute:
Given the deviation of the results in early step, would you mind also upload the sample datasets: Some minor points:
Thanks! |
I am following the basic tutorial here and was using the example dataset. However, I cannot proceed since
TestSoftPowers
.It returns the following error:
I also encountered an error in the previous optional step for doing PCA for the metacells
RunPCAMetacells
, and it gave me the following error message:Below is my session info.
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