Documentation of the Snakemake-Profiles project.
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LICENSE Initial commit Sep 26, 2017
README.md Update README.md Dec 8, 2017

README.md

The Snakemake-Profiles project

The Snakemake-profiles project is an effort to create configuration profiles for executing Snakemake in various computing environments (cluster systems like Slurm, SGE, Grid middleware, cloud computing). Snakemake-profiles has just started, and we need your help to support more computing environments.

Profiles

In the following, you find a list of available profiles.

Profile Authors
surfsara-grid @johanneskoester
pbs-torque @neilav
slurm @percyfal

Documentation

Contribute

Contributing is easy:

  1. Create a new repository for your profile with your github account.
  2. Ensure that your profile follows our guidelines.
  3. Request a inclusion of your profile by creating a new issue. After successful review, we will fork your repository into this organization. This makes it easily discoverable by others, while you can still modify it via pull requests.

Guidelines

  1. A profile repository shall consist of one Snakemake profile.
  2. The structure of the profile should follow the surfsara-grid profile.
  3. The profile has to be installabile via cookiecutter.
  4. The readme of the profile has to provide installation instructions.