Skip to content
master
Go to file
Code

Latest commit

 

Git stats

Files

Permalink
Failed to load latest commit information.
Type
Name
Latest commit message
Commit time
 
 
 
 

README.md

The Snakemake-Profiles project

The Snakemake-profiles project is an effort to create configuration profiles for executing Snakemake in various computing environments (cluster systems like Slurm, SGE, Grid middleware, cloud computing). Snakemake-profiles has just started, and we need your help to support more computing environments.

Profiles

In the following, you find a list of available profiles.

Profile Authors
surfsara-grid @johanneskoester
pbs-torque @neilav
slurm @percyfal
lsf @mbhall88
generic @SilasK
htcondor @jheuel
sge @drjbarker

Documentation

Contribute

Contributing is easy:

  1. Create a new repository for your profile with your github account.
  2. Ensure that your profile follows our guidelines.
  3. Request a inclusion of your profile by creating a new issue. After successful review, we will fork your repository into this organization. This makes it easily discoverable by others, while you can still modify it via pull requests.

Guidelines

  1. A profile repository shall consist of one Snakemake profile.
  2. The structure of the profile should follow the surfsara-grid profile.
  3. The profile has to be installabile via cookiecutter.
  4. The readme of the profile has to provide installation instructions.

About

Documentation of the Snakemake-Profiles project.

Resources

License

Releases

No releases published

Packages

No packages published
You can’t perform that action at this time.