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Strain tracking - getting identified strain names #116

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sanpande opened this issue Feb 3, 2021 · 0 comments
Open

Strain tracking - getting identified strain names #116

sanpande opened this issue Feb 3, 2021 · 0 comments

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@sanpande
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sanpande commented Feb 3, 2021

The strain tracking pipeline gave me a table with site id's and allele counts as follows. Is there a way to get to identified strains with name and possible abundance?

site_id allele count_samples count_A count_T count_C count_G
63572 G 3 0 2 0 1
127401 C 3 2 0 1 0
144689 G 3 0 3 0 1
238073 T 3 0 1 0 3
266469 T 3 0 1 3 0
266786 T 3 0 1 3 0

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