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mzR not able to read mzML #73
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Looking at the content of your We don't support that data, mainly because we haven't had the need so far. But, I wouldn't exclude doing some work towards it. What would be your use case, what do you want to use R for? |
so the data is in |
Sounds good, I can try. Let me know how to proceed. |
Actually, there is a |
I got a bit of time this evening and it seems to work. I will need to do some more testing and add a couple of helper functions and hope to push working code in a couple of days or so. |
@xdomingoal - do you mind if I use the |
No problem! Sample from mouse brain acquired by HILIC ESI-QqQ/MS in Dynamic multiple reaction monitoring mode (MRM). HPLC system was a 1290 Infinity (Agilent Technologies) coupled to ion-Funnel Triple quadrupole 6490 mass spectrometer (Agilent Technologies). |
I have added the MRM file to Tomorrow (most likely), I will push a new version of |
Thank you! |
I have pushed to github now. Travis fails because I am considering preparing a higher level interface in |
I have pushed to Bioc. The first |
I'm not currently able to read mzML/mzXML files (attaced) with mzR from QqQ samples acquired by MRM. I've converted the files using Proteowizard, and with different parameters and options. Although the file seems to be converted well (it can be loaded with proteowizard's seeMS), the file seems to be empty when read by mzR.
standmix-5.mzML.zip
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