Diffrenet results via webserver vs commnad line exe and error input length

[AlonLuboshitz]

Hello,

Running an targetseq on the webserver with buldge sizes of 0 and till 6 missmatches against hg38 genome gives different amount of results comparing to the command line output file.
for example: running the tragetseq: AACTGAGTCCCAAGGTGGGTNGG with parameters mentioned gives around 11k results on the web server but in the commnad line there are around 35k results.

further more in the version 2.4.1 trying to run your input file example as:
/var/chromosomes/human_hg38
NNNNNNNNNNNNNNNNNNNNNRG 2 1
GGCCGACCTGTCGCTGACGCNNN 5

gives an critical error that sequences lengths arnt the same. giving any bulge number to dna\rna and not keeping them empty will give that error.

thanks!