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NAMESPACE
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NAMESPACE
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useDynLib(MEGENA,.registration = TRUE)
exportPattern("^calculate.rho.signed",
"^compute.PFN.par",
"^calculate.PFN",
"^datExpr",
"^do.MEGENA",
"^get.hub.summary",
"^get.union.cut",
"^load.data",
"^MEGENA.ModuleSummary",
"^output.geneSet.file",
"^plot_module",
"^plot_subgraph",
"^planaritytest",
"^get.DegreeHubStatistic",
"^read.geneSet",
"^module_convert_to_table",
"^draw_sunburst_wt_fill",
"^perform.AllPairs.FET",
"^perform.ijPairs.FET",
"^get_module_hierarchy_graph")
importFrom(Rcpp, evalCpp)
#export(evaluate.boundary)
#export(iterative.boundaryUpdate)
#export(nested.kmeans)
#export(nested.kmeans.all)
importFrom(Matrix,Matrix)
importFrom(Matrix,t)
importFrom(Matrix,which)
importFrom("grDevices", "dev.off", "heat.colors", "png")
importFrom("graphics", "abline", "barplot", "hist", "par", "plot")
importFrom("stats", "as.dist", "cor", "cor.test", "dist", "heatmap","p.adjust", "pchisq", "pnorm", "sd", "var")
importFrom("stats", "quantile")
importFrom("parallel","makeCluster")
importFrom("utils", "combn", "read.delim", "write.table")
import(doParallel)
import(igraph)
import(cluster)
import(impute)
import(fpc)
import(foreach)
import(ggraph)
import(ggplot2)
import(reshape)
import(ggrepel)