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sosfert / mmu_dummerstorf_wgs Public

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mmu_dummerstorf_wgs

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30_VCF_to_GDS.R

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mmu_dummerstorf_wgs

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30_VCF_to_GDS.R

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9 lines (7 loc) · 271 Bytes

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library(gdsfmt)

library(SNPRelate)

library(SeqArray)

library(dplyr)

# Convert VCF to GDS

vcf <- "cohort_biallelic[SNPs,INDELs]_VQSR[95,99]_PASS_withmissingness.filtered.vcf"

seqVCF2GDS(vcf, "cohort_biallelic[SNPs,INDELs]_VQSR[95,99]_PASS_withmissingness.filtered.gds")

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