README.md

Misc utility scripts

Misc scripts

• trim-noV.sh - a script to do trimming of short reads. requires khmer >= 2.0.

Debugging and testing scripts

• check-tree.py - exhaustively confirm the results of a search on an SBT.
• compute-dna-mh-another-way.py - a separate implementation of MinHash signature calculation for DNA.
• compute-input-prot-another-way.py - a separate implementation of MinHash signature calculation for proteins.
• compute-prot-mh-another-way.py - a separate implementation of MinHash signature computing for 6-frame translations of DNA into amino acid space.

CTB 1/2019