/
__init__.py
43 lines (39 loc) · 1.34 KB
/
__init__.py
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"""Define the command line interface for sourmash sig
The top level CLI is defined in ../__init__.py. This module defines the CLI for
`sourmash sig` operations.
"""
from . import cat
from . import split
from . import describe
from . import downsample
from . import extract
from . import filter
from . import flatten
from . import intersect
from . import merge
from . import rename
from . import subtract
from . import ingest
from . import export
from . import overlap
from ..utils import command_list
from argparse import SUPPRESS, RawDescriptionHelpFormatter
import os
import sys
def subparser(subparsers):
subparser = subparsers.add_parser('sig', formatter_class=RawDescriptionHelpFormatter, usage=SUPPRESS)
desc = 'Operations\n'
clidir = os.path.dirname(__file__)
ops = command_list(clidir)
for subcmd in ops:
docstring = getattr(sys.modules[__name__], subcmd).__doc__
helpstring = 'sourmash sig {op:s} --help'.format(op=subcmd)
desc += ' {hs:33s} {ds:s}\n'.format(hs=helpstring, ds=docstring)
s = subparser.add_subparsers(
title='Manipulate signature files', dest='subcmd', metavar='subcmd', help=SUPPRESS,
description=desc
)
for subcmd in ops:
getattr(sys.modules[__name__], subcmd).subparser(s)
subparser._action_groups.reverse()
subparser._optionals.title = 'Options'