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CHANGELOG.md

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Changelog

All notable changes to this project will be documented in this file.

The format is based on Keep a Changelog, and this project adheres to Semantic Versioning.

Unreleased

Added:

  • An inverted index, codename Greyhound (#1238)

0.11.0 - 2021-07-07

Added:

  • Add HyperLogLog implementation (#1223)

Changed:

  • Update MinHash.set_abundances to remove hash if 0 abund; handle negative abundances. (#1575)
  • Improving MinHash.remove_many(...) performance (#1571)
  • Improved intersection and union calculations (#1475)
  • Bump MSRV to 1.42 (and other dep fixes) (#1461)
  • Rework the find functionality for Index classes (#1392)
  • Rationalize SourmashSignature.name and str(sig) (#1179)

Fixed:

  • Fix needless borrows as suggested by clippy (#1636)
  • Fix Rust 1.59 lints (#1600)
  • Clean up clippy lints from 1.52 (#1505)
  • Fix clippy lints introduced in 1.51 (#1407)
  • CI/Rust: update and fix cbindgen config (#1473)
  • pin needletail version to keep MSRV at 1.37 (#1393)
  • Update proptest requirement from 0.9.6 to 1.0.0 (#1344)
  • Fix clippy lints introduced in 1.50 and update nix configs (#1332)
  • Update finch requirement from 0.3.0 to 0.4.1 (#1290)
  • update rand for test, and activate "js" feature for getrandom (#1275)
  • Fix new clippy warnings from Rust 1.49 (#1267)
  • CI: small build fixes (#1252)

Removed:

  • Remove 10x support in compute (#1229)

0.10.0 - 2020-10-08

Added:

  • Add clear option to set_abundances(...) method (#1046)

Changed:

  • Replace mx by scaled (#1139)

Fixed:

  • Fix Rust panic error in signature creation (#1172)
  • Update typed-builder requirement from 0.6.0 to 0.7.0 (#1121)
  • update CI for latest branch name change (#1150)
  • Update typed-builder requirement from 0.6.0 to 0.7.0 (#1121)

0.9.0 - 2020-07-13

Added:

  • Cache md5sum calculation (#1058)
  • Expose more of the API for wasm (signature and ComputeParameters) (#1058)
  • Getters and setters for ComputeParameters (#1058)

Changed:

  • Migrate from failure to thiserror (#1058)
  • Bump MSRV to 1.37 (#1058)

Fixed:

  • Use the derive feature in serde instead of serde_derive (#1058)
  • Use nohash-hasher crate instead of previous NoHashHasher from finch.
  • Update typed-builder to 0.6.0 (#1058)
  • stricter niffler versions and add new gz feature to it (#1070)

0.8.0 - 2020-06-26

Added:

  • compute-optimized MinHash (for small scaled or large cardinalities) (#1045)

0.7.0 - 2020-05-12

Changed:

  • Hide internal representation in core (#986)

Fixed:

  • update FFI and cbindgen (#986)

0.6.0 - 2020-04-28

Added:

  • Nodegraph implementation based on khmer.Nodegraph (#799)

0.5.0 - 2020-02-08

Added:

  • add_hash_with_abundance method in core library (#892)

Changed:

  • More refactoring of MinHash comparison code (#882)
  • Replace mins_push and abunds_push with set_abundances (#887)

Fixed:

  • add_hash with num doesn't set abundances properly (#891)

0.4.0 - 2020-01-26

Added:

  • Compute improvements: Parameter sets for defining signatures, add_protein implemented (#845)
  • add_many for faster insertion of multiple hashes (#826)

Changed:

  • Compare/similarity now have a downsample argument (#856)

Fixed:

  • Improve sketching performance with lookup tables for complement and DNA validation (#861) (#865)
  • Use tarpaulin instead of grcov (#862)
  • set up publishing workflow for NPM and crates.io (#824)

0.3.0 - 2020-01-05

Added:

  • Similarity with abundance method for MinHash (#808)
  • Experimental support for indices in Rust (#773)
  • Experimental SBT with MQF internal nodes in Rust (#772)

Changed:

  • Make the sourmash crate library-only (#812)

Fixed:

  • Use once_cell instead of lazy_static and lazy-init (#815)
  • Fix mem leak in get_mins (#807)
  • Fixes for WASI and WASM compilation (#771) (#723)