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export.py
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export.py
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"""export a signature, e.g. to mash"""
usage="""
### `sourmash signature export` - export signatures to mash.
Export signatures from sourmash format. Currently only supports
mash dump format.
For example,
sourmash signature export filename.sig -o filename.sig.msh.json
"""
from sourmash.cli.utils import add_ksize_arg, add_moltype_args
def subparser(subparsers):
subparser = subparsers.add_parser('export', description=__doc__, usage=usage)
subparser.add_argument('filename')
subparser.add_argument(
'-q', '--quiet', action='store_true',
help='suppress non-error output'
)
subparser.add_argument(
'-o', '--output', metavar='FILE',
help='output signature to this file (default stdout)'
)
subparser.add_argument(
'--md5', default=None,
help='select the signature with this md5 as query'
)
add_ksize_arg(subparser)
add_moltype_args(subparser)
def main(args):
import sourmash
return sourmash.sig.__main__.export(args)