/
package.py
32 lines (25 loc) · 1.1 KB
/
package.py
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# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class Tabix(MakefilePackage):
"""Generic indexer for TAB-delimited genome position files"""
homepage = "https://github.com/samtools/tabix"
git = "https://github.com/samtools/tabix.git"
version("2013-12-16", commit="1ae158ac79b459f5feeed7490c67519b14ce9f35")
depends_on("perl", type=("build", "run"))
depends_on("python", type=("build", "run"))
depends_on("zlib-api", type="link")
def install(self, spec, prefix):
mkdirp(prefix.bin)
mkdirp(prefix.share.man.man1)
install("tabix", prefix.bin)
install("bgzip", prefix.bin)
install("tabix.py", prefix.bin)
install("tabix.1", prefix.share.man.man1)
install("tabix.tex", prefix.share)
install("TabixReader.java", prefix.bin)
install("libtabix.a", prefix.lib)
install_tree("perl", prefix.perl)
install_tree("python", prefix.python)