Cannot use config:shared_linking:bind:true anymore
#44341
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alalazo
changed the title
config:shared_linking:bind:true anymore
|
Possibly broken by #42318 |
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Steps to reproduce the issue
Turn this non-default option on:
$ spack config add config:shared_linking:bind:trueThen try to install anything:
Error message
Error message
==> [2024-05-23-12:45:05.723837] Adding env modifications for patchelf ==> [2024-05-23-12:45:05.741491] Error: TypeError: argument should be a str or an os.PathLike object where __fspath__ returns a str, not 'Executable' See build log for details: /tmp/root/spack-stage/spack-stage-gcc-runtime-11.4.1-w3a63xayu37ralwmc6jxy2cb6mmmwgu3/spack-build-out.txt Traceback (most recent call last): File "/cluster/spack/app/lib/spack/spack/build_environment.py", line 1151, in _setup_pkg_and_run return_value = function(pkg, kwargs) ^^^^^^^^^^^^^^^^^^^^^ File "/cluster/spack/app/lib/spack/spack/installer.py", line 2482, in build_process return installer.run() ^^^^^^^^^^^^^^^ File "/cluster/spack/app/lib/spack/spack/installer.py", line 2359, in run spack.hooks.post_install(self.pkg.spec, self.explicit) File "/cluster/spack/app/lib/spack/spack/hooks/__init__.py", line 67, in __call__ hook(*args, **kwargs) File "/cluster/spack/app/lib/spack/spack/hooks/absolutify_elf_sonames.py", line 155, in post_install patchelf = Executable(patchelf_path) ^^^^^^^^^^^^^^^^^^^^^^^^^ File "/cluster/spack/app/lib/spack/spack/util/executable.py", line 23, in __init__ file_path = str(Path(name)) ^^^^^^^^^^ File "/usr/lib64/python3.12/pathlib.py", line 1162, in __init__ super().__init__(*args) File "/usr/lib64/python3.12/pathlib.py", line 373, in __init__ raise TypeError( TypeError: argument should be a str or an os.PathLike object where __fspath__ returns a str, not 'Executable' ==> [2024-05-23-12:45:05.741797] Flagging gcc-runtime-11.4.1-w3a63xayu37ralwmc6jxy2cb6mmmwgu3 as failed: TypeError: argument should be a str or an os.PathLike object where __fspath__ returns a str, not 'Executable' ==> [2024-05-23-12:45:05.744836] ChildError: TypeError: argument should be a str or an os.PathLike object where __fspath__ returns a str, not 'Executable'Information on your system
Additional information
spack-build-out.txt
spack-build-env.txt
function BASH_FUNC__spack_shell_wrapper%%() { for var in DYLD_LIBRARY_PATH DYLD_FALLBACK_LIBRARY_PATH; do eval "if [ -n \"\${${var}-}\" ]; then export SPACK_$var=\${${var}}; fi"; done; if [ -n "${ZSH_VERSION:-}" ]; then emulate -L sh; fi; _sp_flags=""; while [ ! -z ${1+x} ] && [ "${1#-}" != "${1}" ]; do _sp_flags="$_sp_flags $1"; shift; done; if [ -n "$_sp_flags" ] && [ "${_sp_flags#*h}" != "${_sp_flags}" ] || [ "${_sp_flags#*V}" != "${_sp_flags}" ]; then command spack $_sp_flags "$@"; return; fi; _sp_subcommand=""; if [ ! -z ${1+x} ]; then _sp_subcommand="$1"; shift; fi; case $_sp_subcommand in "cd") _sp_arg=""; if [ -n "$1" ]; then _sp_arg="$1"; shift; fi; if [ "$_sp_arg" = "-h" ] || [ "$_sp_arg" = "--help" ]; then command spack cd -h; else LOC="$(SPACK_COLOR="${SPACK_COLOR:-always}" spack location $_sp_arg "$@")"; if [ -d "$LOC" ]; then cd "$LOC"; else return 1; fi; fi; return ;; "env") _sp_arg=""; if [ -n "$1" ]; then _sp_arg="$1"; shift; fi; if [ "$_sp_arg" = "-h" ] || [ "$_sp_arg" = "--help" ]; then command spack env -h; else case $_sp_arg in activate) _a=" $@"; if [ "${_a#* --sh}" != "$_a" ] || [ "${_a#* --csh}" != "$_a" ] || [ "${_a#* -h}" != "$_a" ] || [ "${_a#* --help}" != "$_a" ]; then command spack env activate "$@"; else stdout="$(SPACK_COLOR="${SPACK_COLOR:-always}" command spack $_sp_flags env activate --sh "$@")" || return; eval "$stdout"; fi ;; deactivate) _a=" $@"; if [ "${_a#* --sh}" != "$_a" ] || [ "${_a#* --csh}" != "$_a" ]; then command spack env deactivate "$@"; else if [ -n "$*" ]; then command spack env deactivate -h; else stdout="$(SPACK_COLOR="${SPACK_COLOR:-always}" command spack $_sp_flags env deactivate --sh)" || return; eval "$stdout"; fi; fi ;; *) command spack env $_sp_arg "$@" ;; esac; fi; return ;; "load" | "unload") _a=" $@"; if [ "${_a#* --sh}" != "$_a" ] || [ "${_a#* --csh}" != "$_a" ] || [ "${_a#* -h}" != "$_a" ] || [ "${_a#* --list}" != "$_a" ] || [ "${_a#* --help}" != "$_a" ]; then command spack $_sp_flags $_sp_subcommand "$@"; else stdout="$(SPACK_COLOR="${SPACK_COLOR:-always}" command spack $_sp_flags $_sp_subcommand --sh "$@")" || return; eval "$stdout"; fi ;; *) command spack $_sp_flags $_sp_subcommand "$@" ;; esac }; export -f BASH_FUNC__spack_shell_wrapper%% function BASH_FUNC_spack%%() { : this is a shell function from: /cluster/spack/app/share/spack/setup-env.sh; : the real spack script is here: /cluster/spack/app/bin/spack; _spack_shell_wrapper "$@"; return $? }; export -f BASH_FUNC_spack%% function BASH_FUNC_which%%() { ( alias; eval ${which_declare} ) | /usr/bin/which --tty-only --read-alias --read-functions --show-tilde --show-dot $@ }; export -f BASH_FUNC_which%% CC=/cluster/spack/app/lib/spack/env/gcc/gcc; export CC CXX=/cluster/spack/app/lib/spack/env/gcc/g++; export CXX DEBUGINFOD_URLS="https://debuginfod.centos.org/ "; export DEBUGINFOD_URLS F77=/cluster/spack/app/lib/spack/env/gcc/gfortran; export F77 FC=/cluster/spack/app/lib/spack/env/gcc/gfortran; export FC HISTCONTROL=ignoredups; export HISTCONTROL HISTSIZE=1000; export HISTSIZE HOME=/root; export HOME HOSTNAME=dungeonkeeper; export HOSTNAME LANG=de_DE.UTF-8; export LANG LC_ALL=C; export LC_ALL LESSOPEN="||/usr/bin/lesspipe.sh %s"; export LESSOPEN LOGNAME=root; export LOGNAME LS_COLORS=""; export LS_COLORS MAIL=/var/spool/mail/root; export MAIL PATH=/cluster/spack/app/lib/spack/env/gcc:/cluster/spack/app/lib/spack/env/case-insensitive:/cluster/spack/app/lib/spack/env:/root/.local/bin:/root/bin:/cluster/spack/app/bin:/usr/local/sbin:/sbin:/bin:/usr/sbin:/usr/bin; export PATH #PWD=/root; export PWD SHELL=/bin/bash; export SHELL SHLVL=1; export SHLVL SPACK_CC=/usr/bin/gcc; export SPACK_CC SPACK_CC_RPATH_ARG=-Wl,-rpath,; export SPACK_CC_RPATH_ARG SPACK_COMPILER_FLAGS_KEEP=""; export SPACK_COMPILER_FLAGS_KEEP SPACK_COMPILER_FLAGS_REPLACE="-Werror-|-Wno-error= -Werror|-Wno-error"; export SPACK_COMPILER_FLAGS_REPLACE SPACK_COMPILER_SPEC=gcc@=11.4.1; export SPACK_COMPILER_SPEC SPACK_CXX=/usr/bin/g++; export SPACK_CXX SPACK_CXX_RPATH_ARG=-Wl,-rpath,; export SPACK_CXX_RPATH_ARG SPACK_DEBUG=TRUE; export SPACK_DEBUG SPACK_DEBUG_LOG_DIR=/root; export SPACK_DEBUG_LOG_DIR SPACK_DEBUG_LOG_ID=gcc-runtime-w3a63xa; export SPACK_DEBUG_LOG_ID SPACK_DTAGS_TO_ADD=--disable-new-dtags; export SPACK_DTAGS_TO_ADD SPACK_DTAGS_TO_STRIP=--enable-new-dtags; export SPACK_DTAGS_TO_STRIP SPACK_ENV_PATH=/cluster/spack/app/lib/spack/env:/cluster/spack/app/lib/spack/env/case-insensitive:/cluster/spack/app/lib/spack/env/gcc; export SPACK_ENV_PATH SPACK_F77=/usr/bin/gfortran; export SPACK_F77 SPACK_F77_RPATH_ARG=-Wl,-rpath,; export SPACK_F77_RPATH_ARG SPACK_FC=/usr/bin/gfortran; export SPACK_FC SPACK_FC_RPATH_ARG=-Wl,-rpath,; export SPACK_FC_RPATH_ARG SPACK_INCLUDE_DIRS=""; export SPACK_INCLUDE_DIRS SPACK_LINKER_ARG=-Wl,; export SPACK_LINKER_ARG SPACK_LINK_DIRS=""; export SPACK_LINK_DIRS SPACK_MANAGED_DIRS="\"/cluster/spack/packages/\"*|\"/tmp/root/spack-stage/\"*"; export SPACK_MANAGED_DIRS SPACK_PYTHON=/usr/bin/python3.12; export SPACK_PYTHON SPACK_ROOT=/cluster/spack/app; export SPACK_ROOT SPACK_RPATH_DIRS=""; export SPACK_RPATH_DIRS SPACK_SHORT_SPEC="gcc-runtime@11.4.1%gcc@11.4.1 build_system=generic arch=linux-almalinux9-x86_64_v3/w3a63xa"; export SPACK_SHORT_SPEC SPACK_SKIP_MODULES=1; export SPACK_SKIP_MODULES SPACK_STORE_INCLUDE_DIRS=""; export SPACK_STORE_INCLUDE_DIRS SPACK_STORE_LINK_DIRS=""; export SPACK_STORE_LINK_DIRS SPACK_STORE_RPATH_DIRS=/cluster/spack/packages/linux-almalinux9-x86_64_v3/gcc-11.4.1/gcc-runtime-11.4.1-w3a63xayu37ralwmc6jxy2cb6mmmwgu3/lib:/cluster/spack/packages/linux-almalinux9-x86_64_v3/gcc-11.4.1/gcc-runtime-11.4.1-w3a63xayu37ralwmc6jxy2cb6mmmwgu3/lib64; export SPACK_STORE_RPATH_DIRS SPACK_SYSTEM_DIRS="\"/\"|\"//\"|\"/bin\"|\"/bin/\"|\"/bin64\"|\"/bin64/\"|\"/include\"|\"/include/\"|\"/lib\"|\"/lib/\"|\"/lib64\"|\"/lib64/\"|\"/usr\"|\"/usr/\"|\"/usr/bin\"|\"/usr/bin/\"|\"/usr/bin64\"|\"/usr/bin64/\"|\"/usr/include\"|\"/usr/include/\"|\"/usr/lib\"|\"/usr/lib/\"|\"/usr/lib64\"|\"/usr/lib64/\"|\"/usr/local\"|\"/usr/local/\"|\"/usr/local/bin\"|\"/usr/local/bin/\"|\"/usr/local/bin64\"|\"/usr/local/bin64/\"|\"/usr/local/include\"|\"/usr/local/include/\"|\"/usr/local/lib\"|\"/usr/local/lib/\"|\"/usr/local/lib64\"|\"/usr/local/lib64/\""; export SPACK_SYSTEM_DIRS SPACK_TARGET_ARGS="-march=x86-64-v3 -mtune=generic"; export SPACK_TARGET_ARGS SUDO_COMMAND=/bin/bash; export SUDO_COMMAND SUDO_GID=2000; export SUDO_GID SUDO_UID=2000; export SUDO_UID SUDO_USER=mavieth; export SUDO_USER TERM=alacritty; export TERM USER=root; export USER XDG_DATA_DIRS=/root/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share:/usr/share; export XDG_DATA_DIRS which_declare="declare -f"; export which_declare@haampie
Note:
I'm able to fix the problem by adding
.pathto line 152 inlib/spack/spack/hooks/absolutify_elf_sonames.py. But I'm not sure, if this could break other setups.General information
spack debug reportand reported the version of Spack/Python/Platformspack maintainers <name-of-the-package>and @mentioned any maintainersThe text was updated successfully, but these errors were encountered: