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StarDist

The code in this repository implements object detection with star-convex polygons as described in the paper:

Uwe Schmidt, Martin Weigert, Coleman Broaddus, and Gene Myers.
Cell Detection with Star-convex Polygons.
International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI), Granada, Spain, September 2018.

Please cite the paper if you are using this code in your research.

Installation

This package requires Python 3 and can be installed with pip:

pip install stardist

Notes

  • Depending on your Python installation, you may need to use pip3 instead of pip.
  • Since this package relies on a C++ extension, you may run into compilation problems on some platforms. We currently do not provide pre-compiled binaries.

Usage

We provide several Jupyter notebooks that illustrate how this package can be used.