-
Notifications
You must be signed in to change notification settings - Fork 214
/
setup.py
77 lines (63 loc) · 2.22 KB
/
setup.py
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
from __future__ import absolute_import, print_function
from setuptools import setup, find_packages, Extension
from numpy.distutils.misc_util import get_numpy_include_dirs
from os import path
def openmp_available():
import os, subprocess, shutil
from distutils.sysconfig import get_config_var
from tempfile import mkdtemp
try:
curdir = os.getcwd()
tmpdir = mkdtemp()
os.chdir(tmpdir)
compiler = os.environ.get('CXX',get_config_var('CXX')).split()[0]
filename = 'test.cpp'
with open(filename,'w') as f:
f.write("#include <omp.h>\nint main() { return omp_get_num_threads(); }")
with open(os.devnull,'w') as void:
return 0 == subprocess.call([compiler, '-fopenmp', filename], stdout=void, stderr=void)
except:
return False
finally:
os.chdir(curdir)
shutil.rmtree(tmpdir)
_dir = path.abspath(path.dirname(__file__))
with open(path.join(_dir,'stardist','version.py')) as f:
exec(f.read())
with open(path.join(_dir,'README.md')) as f:
long_description = f.read()
extra_args = [] # ['-std=c++11']
extra_args += ['-fopenmp'] if openmp_available() else []
setup(
name='stardist',
version=__version__,
description='StarDist',
long_description=long_description,
long_description_content_type='text/markdown',
url='https://github.com/mpicbg-csbd/stardist',
author='Uwe Schmidt, Martin Weigert',
author_email='uschmidt@mpi-cbg.de, mweigert@mpi-cbg.de',
license='BSD 3-Clause License',
packages=find_packages(),
ext_modules=[
Extension(
'stardist.lib.stardist',
sources=['stardist/lib/stardist.cpp','stardist/lib/clipper.cpp'],
include_dirs=get_numpy_include_dirs(),
extra_compile_args=extra_args,
extra_link_args=extra_args,
)
],
classifiers=[
'Development Status :: 4 - Beta',
'Intended Audience :: Science/Research',
'Topic :: Scientific/Engineering',
'License :: OSI Approved :: BSD License',
'Programming Language :: Python :: 3.5',
'Programming Language :: Python :: 3.6',
],
install_requires=[
"csbdeep",
"scikit-image",
],
)