Starred Repositories
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🎉 performant confetti animation in the browser
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Starter Kit server implementation of the GA4GH Workflow Execution Service (WES) specification
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Metadata database for ENCODE project
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Converts a CSV data file exported from REDCap into the NACC's UDS3 fixed-width format.
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Interactive UI for generating metadata schema templates
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This repo is for the metadata schemas associated with the HCA
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Manuscript describing open collaborative writing with Manubot
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Identifying active enhancers and well known transcritption factor binding sites from GRO-seq data.
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DEPRECIATED! Please use nf-core/tools instead
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Python utilities for Manubot: Manuscripts, open and automated
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RNAseq analysis pipeline
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Empty template for nextflow pipelines
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A data processing platform for ChIP-seq, RNA-seq, MNase-seq, DNase-seq, ATAC-seq and GRO-seq datasets. Please ignore information on cipher.readthedocs.io, it is currently out of date. Follow information in README.
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Clone me to create your Manubot manuscript
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A toolkit to learn how to model and interpret regulatory sequence data using deep learning.
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Antimicrobial Resistance Identification By Assembly
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Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
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Intervene: a tool for intersection and visualization of multiple genomic region and gene sets
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The most cited deep learning papers
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Applied Computational Genomics Course at UU: Spring 2020
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Program to manipulate and extract TSS from Cappable-seq experiments
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Extract uniprot mappings to other vocabularies
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Practical tutorials and labs for TensorFlow used by Nvidia, FFN, CNN, RNN, Kaggle, AE