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GenomeDiff (*.gd) file parser for Python
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JAX-based neural network library
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Epidemiological modeling framework for pathogen population genetics and evolution.
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Dirichlet MLE python library
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Implementation of (2018) Neural Ordinary Differential Equations on Keras
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Differentiable SDE solvers with GPU support and efficient sensitivity analysis.
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Study on lexibank data (presenting the lexibank dataset).
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Differentiable ODE solvers with full GPU support and O(1)-memory backpropagation.
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3- and 4- element composition plots in Python using Matplotlib
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Expanding the model to include environmental fluctuations to model the effects of stress on learning and song evolution.
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Mixtures of Probabilistic Principal Component Analysers implementation in python
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A didactic Python library with well-commented and annotated implementations of machine learning algorithms.
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Variational Bayesian Mixture of Factor Analysers
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Python package to read and write R RData and Rds files into/from pandas dataframes. No R or other external dependencies required.
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Modeling toolkit for biochemical simulation
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EGG: Emergence of lanGuage in Games
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Supplementary code for Introduction to Theoretical Computer Science book.
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A flexible version of CorEx developed for bio-data challenges that handles missing data, continuous/discrete variables, multi-CPU, overlapping structure, and includes visualizations
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Scalable genetics toolkit
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AustroGames is an R package with data on games played by ethnolinguistic groups in Oceania. It coincides with a publication by Leisterer-Peoples, et al. (2021).
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This is the code for the paper "A review of Approximate Bayesian Computation:inference for simulator-models" by Grazian and Fan (2019)
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Latent and generative models of animal vocalizations for songbirds, mice, primates, humans, cetaceans, etc.
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Mixture Density Networks with Keras
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Praat in Python, the Pythonic way
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A python package for non parametric Mann Kendall family of trend tests.
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Solve symbolically defined systems of non-linear equations numerically.
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A Fast Implementation of Random Forests
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Simulation-based inference benchmark
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Models of SEIRS epidemic dynamics with extensions, including network-structured populations, testing, contact tracing, and social distancing.