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Can't import bdss-hisat2-alignment-pe(with-quality-control).ga workflow #2

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spficklin opened this issue Nov 5, 2017 · 1 comment

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@spficklin
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When importing this workflow I get the following error messages:

Internal Server Error
Galaxy was unable to successfully complete your request

URL: https://galaxy.bioinfo.wsu.edu/workflow/import_workflow
Module galaxy.web.framework.middleware.error:154 in call

app_iter = self.application(environ, sr_checker)
Module paste.recursive:85 in call
return self.application(environ, start_response)
Module paste.httpexceptions:640 in call
return self.application(environ, start_response)
Module galaxy.web.framework.base:134 in call
return self.handle_request( environ, start_response )
Module galaxy.web.framework.base:193 in handle_request
body = method( trans, **kwargs )
Module galaxy.webapps.galaxy.controllers.workflow:956 in import_workflow
workflow, missing_tool_tups = self._workflow_from_dict( trans, data, source=src, add_to_menu=add_to_menu )
Module galaxy.web.base.controller:1180 in _workflow_from_dict
exact_tools=exact_tools,
Module galaxy.managers.workflows:206 in build_workflow_from_dict
exact_tools=exact_tools,
Module galaxy.managers.workflows:298 in _workflow_from_dict
module, step = self.__track_module_from_dict( trans, steps, steps_by_external_id, step_dict, exact_tools=exact_tools )
Module galaxy.managers.workflows:850 in __track_module_from_dict
module, step = self.__module_from_dict( trans, step_dict, exact_tools=exact_tools )
Module galaxy.managers.workflows:897 in __module_from_dict
module.save_to_step( step )
Module galaxy.workflow.modules:880 in save_to_step
step.tool_inputs = self.tool.params_to_strings( self.state.inputs, self.trans.app )
Module galaxy.tools:1380 in params_to_strings
return params_to_strings( self.inputs, params, app )
Module galaxy.tools.parameters:149 in params_to_strings
value = params[ key ].value_to_basic( value, app )
Module galaxy.tools.parameters.grouping:553 in value_to_basic
current_case = rval[ 'current_case' ] = self.get_current_case( value[ self.test_param.name ] )
Module galaxy.tools.parameters.grouping:548 in get_current_case
raise ValueError( "No case matched value:", self.name, str_value )
ValueError: ('No case matched value:', 'reference_genome', 'None')

@MingChen0919
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there is some problem with installing the bdss tool on the WSU galaxy. this has not been fixed yet.

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