We read every piece of feedback, and take your input very seriously.
To see all available qualifiers, see our documentation.
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
When importing this workflow I get the following error messages:
Internal Server Error Galaxy was unable to successfully complete your request URL: https://galaxy.bioinfo.wsu.edu/workflow/import_workflow Module galaxy.web.framework.middleware.error:154 in call app_iter = self.application(environ, sr_checker) Module paste.recursive:85 in call return self.application(environ, start_response) Module paste.httpexceptions:640 in call return self.application(environ, start_response) Module galaxy.web.framework.base:134 in call return self.handle_request( environ, start_response ) Module galaxy.web.framework.base:193 in handle_request body = method( trans, **kwargs ) Module galaxy.webapps.galaxy.controllers.workflow:956 in import_workflow workflow, missing_tool_tups = self._workflow_from_dict( trans, data, source=src, add_to_menu=add_to_menu ) Module galaxy.web.base.controller:1180 in _workflow_from_dict exact_tools=exact_tools, Module galaxy.managers.workflows:206 in build_workflow_from_dict exact_tools=exact_tools, Module galaxy.managers.workflows:298 in _workflow_from_dict module, step = self.__track_module_from_dict( trans, steps, steps_by_external_id, step_dict, exact_tools=exact_tools ) Module galaxy.managers.workflows:850 in __track_module_from_dict module, step = self.__module_from_dict( trans, step_dict, exact_tools=exact_tools ) Module galaxy.managers.workflows:897 in __module_from_dict module.save_to_step( step ) Module galaxy.workflow.modules:880 in save_to_step step.tool_inputs = self.tool.params_to_strings( self.state.inputs, self.trans.app ) Module galaxy.tools:1380 in params_to_strings return params_to_strings( self.inputs, params, app ) Module galaxy.tools.parameters:149 in params_to_strings value = params[ key ].value_to_basic( value, app ) Module galaxy.tools.parameters.grouping:553 in value_to_basic current_case = rval[ 'current_case' ] = self.get_current_case( value[ self.test_param.name ] ) Module galaxy.tools.parameters.grouping:548 in get_current_case raise ValueError( "No case matched value:", self.name, str_value ) ValueError: ('No case matched value:', 'reference_genome', 'None')
Internal Server Error Galaxy was unable to successfully complete your request
URL: https://galaxy.bioinfo.wsu.edu/workflow/import_workflow Module galaxy.web.framework.middleware.error:154 in call
app_iter = self.application(environ, sr_checker) Module paste.recursive:85 in call return self.application(environ, start_response) Module paste.httpexceptions:640 in call return self.application(environ, start_response) Module galaxy.web.framework.base:134 in call return self.handle_request( environ, start_response ) Module galaxy.web.framework.base:193 in handle_request body = method( trans, **kwargs ) Module galaxy.webapps.galaxy.controllers.workflow:956 in import_workflow workflow, missing_tool_tups = self._workflow_from_dict( trans, data, source=src, add_to_menu=add_to_menu ) Module galaxy.web.base.controller:1180 in _workflow_from_dict exact_tools=exact_tools, Module galaxy.managers.workflows:206 in build_workflow_from_dict exact_tools=exact_tools, Module galaxy.managers.workflows:298 in _workflow_from_dict module, step = self.__track_module_from_dict( trans, steps, steps_by_external_id, step_dict, exact_tools=exact_tools ) Module galaxy.managers.workflows:850 in __track_module_from_dict module, step = self.__module_from_dict( trans, step_dict, exact_tools=exact_tools ) Module galaxy.managers.workflows:897 in __module_from_dict module.save_to_step( step ) Module galaxy.workflow.modules:880 in save_to_step step.tool_inputs = self.tool.params_to_strings( self.state.inputs, self.trans.app ) Module galaxy.tools:1380 in params_to_strings return params_to_strings( self.inputs, params, app ) Module galaxy.tools.parameters:149 in params_to_strings value = params[ key ].value_to_basic( value, app ) Module galaxy.tools.parameters.grouping:553 in value_to_basic current_case = rval[ 'current_case' ] = self.get_current_case( value[ self.test_param.name ] ) Module galaxy.tools.parameters.grouping:548 in get_current_case raise ValueError( "No case matched value:", self.name, str_value ) ValueError: ('No case matched value:', 'reference_genome', 'None')
The text was updated successfully, but these errors were encountered:
there is some problem with installing the bdss tool on the WSU galaxy. this has not been fixed yet.
Sorry, something went wrong.
No branches or pull requests
When importing this workflow I get the following error messages:
The text was updated successfully, but these errors were encountered: