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GEE test errors on Debian Wheezy #1409

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josef-pkt opened this issue Feb 21, 2014 · 2 comments

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commented Feb 21, 2014

from
http://nipy.bic.berkeley.edu/builders/statsmodels-py2.x-wheezy-sparc/builds/96/steps/shell_4/logs/stdio

======================================================================
ERROR: Failure: Exception (Reindexing only valid with uniquely valued Index objects)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/home/buildslave/nd-bb-slave-sparc-wheezy/statsmodels-py2_x-wheezy-sparc/build/venv/local/lib/python2.7/site-packages/nose/loader.py", line 413, in loadTestsFromName
    addr.filename, addr.module)
  File "/home/buildslave/nd-bb-slave-sparc-wheezy/statsmodels-py2_x-wheezy-sparc/build/venv/local/lib/python2.7/site-packages/nose/importer.py", line 47, in importFromPath
    return self.importFromDir(dir_path, fqname)
  File "/home/buildslave/nd-bb-slave-sparc-wheezy/statsmodels-py2_x-wheezy-sparc/build/venv/local/lib/python2.7/site-packages/nose/importer.py", line 94, in importFromDir
    mod = load_module(part_fqname, fh, filename, desc)
  File "/home/buildslave/nd-bb-slave-sparc-wheezy/statsmodels-py2_x-wheezy-sparc/build/venv/local/lib/python2.7/site-packages/statsmodels-0.6.0-py2.7-linux-sparc64.egg/statsmodels/discrete/tests/test_sandwich_cov.py", line 26, in <module>
    data = data_raw.dropna()
  File "/usr/lib/pymodules/python2.7/pandas/core/frame.py", line 2488, in dropna
    return self.reindex(**{axis_name: new_labels})
  File "/usr/lib/pymodules/python2.7/pandas/core/frame.py", line 2122, in reindex
    fill_value, limit)
  File "/usr/lib/pymodules/python2.7/pandas/core/frame.py", line 2198, in _reindex_index
    limit=limit)
  File "/usr/lib/pymodules/python2.7/pandas/core/index.py", line 791, in reindex
    limit=limit)
  File "/usr/lib/pymodules/python2.7/pandas/core/index.py", line 712, in get_indexer
    raise Exception('Reindexing only valid with uniquely valued Index '
Exception: Reindexing only valid with uniquely valued Index objects

======================================================================
ERROR: Gaussian GEE with independence correlation should agree
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/home/buildslave/nd-bb-slave-sparc-wheezy/statsmodels-py2_x-wheezy-sparc/build/venv/local/lib/python2.7/site-packages/nose/case.py", line 197, in runTest
    self.test(*self.arg)
  File "/home/buildslave/nd-bb-slave-sparc-wheezy/statsmodels-py2_x-wheezy-sparc/build/venv/local/lib/python2.7/site-packages/statsmodels-0.6.0-py2.7-linux-sparc64.egg/statsmodels/genmod/tests/test_gee.py", line 526, in test_compare_OLS
    covstruct=vs)
  File "/home/buildslave/nd-bb-slave-sparc-wheezy/statsmodels-py2_x-wheezy-sparc/build/venv/local/lib/python2.7/site-packages/statsmodels-0.6.0-py2.7-linux-sparc64.egg/statsmodels/base/model.py", line 104, in from_formula
    mod = cls(endog, exog, *args, **kwargs)
  File "/home/buildslave/nd-bb-slave-sparc-wheezy/statsmodels-py2_x-wheezy-sparc/build/venv/local/lib/python2.7/site-packages/statsmodels-0.6.0-py2.7-linux-sparc64.egg/statsmodels/genmod/generalized_estimating_equations.py", line 298, in __init__
    self.endog_li = self._cluster_list(self.endog)
  File "/home/buildslave/nd-bb-slave-sparc-wheezy/statsmodels-py2_x-wheezy-sparc/build/venv/local/lib/python2.7/site-packages/statsmodels-0.6.0-py2.7-linux-sparc64.egg/statsmodels/genmod/generalized_estimating_equations.py", line 368, in _cluster_list
    for k in self.group_labels]
IndexError: too many indices

There are several more of the IndexError: too many indices

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commented Feb 21, 2014

possibly a problem because pandas is too old on that machine 0.8

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commented Jun 18, 2014

closing:
we increased the pandas version requirement. I don't think this applies anymore

@josef-pkt josef-pkt closed this Jun 18, 2014

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