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DESCRIPTION
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DESCRIPTION
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Type: Package
Package: tidySummarizedExperiment
Title: Brings SummarizedExperiment to the Tidyverse
Version: 1.15.0
Authors@R: c(person("Stefano", "Mangiola", email = "mangiolastefano@gmail.com",
role = c("aut", "cre")) )
Description: The tidySummarizedExperiment package provides a set of tools for creating and
manipulating tidy data representations of SummarizedExperiment objects. SummarizedExperiment
is a widely used data structure in bioinformatics for storing high-throughput genomic data,
such as gene expression or DNA sequencing data.
The tidySummarizedExperiment package introduces a tidy framework for working with SummarizedExperiment objects.
It allows users to convert their data into a tidy format, where each observation is a row
and each variable is a column. This tidy representation simplifies data manipulation,
integration with other tidyverse packages, and enables seamless integration with the broader
ecosystem of tidy tools for data analysis.
License: GPL-3
Depends:
R (>= 4.3.0),
SummarizedExperiment,
ttservice (>= 0.4.0)
Imports:
dplyr,
tibble (>= 3.0.4),
magrittr,
tidyr,
ggplot2,
rlang,
purrr,
lifecycle,
methods,
utils,
S4Vectors,
tidyselect,
ellipsis,
vctrs,
pillar,
stringr,
cli,
fansi,
stats,
pkgconfig
Suggests:
BiocStyle,
testthat,
knitr,
markdown,
rmarkdown,
plotly
VignetteBuilder:
knitr
RdMacros:
lifecycle
Biarch: true
biocViews: AssayDomain, Infrastructure, RNASeq, DifferentialExpression, GeneExpression, Normalization, Clustering, QualityControl, Sequencing, Transcription, Transcriptomics
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.2.3
Roxygen: list(markdown = TRUE)
LazyDataCompression: xz
URL: https://github.com/stemangiola/tidySummarizedExperiment
BugReports: https://github.com/stemangiola/tidySummarizedExperiment/issues