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manip_ties.R
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manip_ties.R
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#' Modifying tie data
#'
#' @description
#' These functions allow users to add and delete ties and their attributes:
#'
#' - `add_ties()` adds additional ties to network data
#' - `delete_ties()` deletes ties from network data
#' - `add_tie_attribute()` and `mutate_ties()` offer ways to add
#' a vector of values to a network as a tie attribute.
#' - `rename_ties()` renames tie attributes.
#' - `bind_ties()` appends the tie data from two networks and
#' `join_ties()` merges ties from two networks,
#' adding a tie attribute identifying the newly added ties.
#' - `filter_ties()` subsets ties based on some tie attribute-related logical statement.
#'
#' Note that while `add_*()`/`delete_*()` functions operate similarly as comparable `{igraph}` functions,
#' `mutate*()`, `bind*()`, etc work like `{tidyverse}` or `{dplyr}`-style functions.
#' @family modifications
#' @inheritParams add_nodes
#' @param attr_name Name of the new attribute in the resulting object.
#' @return A tidygraph (`tbl_graph`) data object.
#' @examples
#' other <- create_filled(4) %>% mutate(name = c("A", "B", "C", "D"))
#' mutate_ties(other, form = 1:6) %>% filter_ties(form < 4)
#' add_tie_attribute(other, "weight", c(1, 2, 2, 2, 1, 2))
#' @name add_ties
NULL
#' @rdname add_ties
#' @param ties The number of ties to be added or an even list of ties.
#' @importFrom igraph add_edges
#' @export
add_ties <- function(.data, ties, attribute = NULL) UseMethod("add_ties")
#' @export
add_ties.igraph <- function(.data, ties, attribute = NULL){
igraph::add_edges(.data, edges = ties, attr = attribute)
}
#' @export
add_ties.tbl_graph <- function(.data, ties, attribute = NULL){
as_tidygraph(add_ties(as_igraph(.data), ties, attribute))
}
#' @export
add_ties.network <- function(.data, ties, attribute = NULL){
as_network(add_ties(as_igraph(.data), ties, attribute))
}
#' @rdname add_ties
#' @importFrom igraph delete_edges
#' @export
delete_ties <- function(.data, ties) UseMethod("delete_ties")
#' @export
delete_ties.igraph <- function(.data, ties){
igraph::delete_edges(.data, edges = ties)
}
#' @rdname add_ties
#' @importFrom igraph edge_attr
#' @export
add_tie_attribute <- function(.data, attr_name, vector){
out <- as_igraph(.data)
igraph::edge_attr(out, name = attr_name) <- vector
if(inherits(.data, "tbl_graph")) as_tidygraph(out) else
if(inherits(.data, "igraph")) as_igraph(out) else
if(inherits(.data, "igraph")) as_network(out) else
if(inherits(.data, "data.frame")) as_edgelist(out) else
message(paste("This function only works for",
"igraph, tidygraph, or network objects or data frame edgelists."))
}
#' @rdname add_ties
#' @importFrom tidygraph activate
#' @export
mutate_ties <- function(.data, ...){
nodes <- edges <- NULL
out <- as_tidygraph(.data)
out %>% tidygraph::activate(edges) %>% mutate(...) %>% activate(nodes)
}
#' @rdname add_ties
#' @importFrom dplyr rename
#' @export
rename_ties <- function(.data, ...){
nodes <- edges <- NULL
out <- as_tidygraph(.data)
out %>% tidygraph::activate(edges) %>% dplyr::rename(...) %>% activate(nodes)
}
#' @rdname add_ties
#' @importFrom tidygraph bind_edges
#' @export
bind_ties <- function(.data, ...){
tidygraph::bind_edges(.data, ...)
}
#' @rdname add_ties
#' @importFrom igraph add_edges set_edge_attr E
#' @importFrom dplyr mutate summarise across group_by everything ungroup %>%
#' @export
join_ties <- function(.data, object2, attr_name) {
edges <- from <- to <- NULL
el <- c(t(as.matrix(as_edgelist(object2))))
obj <- as_tidygraph(.data) %>%
tidygraph::activate(edges)
if(ncol(as.data.frame(obj)) < 3){
obj <- obj %>% igraph::set_edge_attr("orig", value = 1)
}
out <- igraph::add_edges(as_igraph(obj),
el, object2 = 1) %>%
as_tidygraph()
if(!missing(attr_name)){
out <- igraph::set_edge_attr(out, attr_name,
value = igraph::E(out)$object2) %>%
select_ties(-object2)
}
edges <- out %>%
tidygraph::activate(edges) %>%
as.data.frame() %>%
dplyr::group_by(from, to) %>%
dplyr::summarise(dplyr::across(dplyr::everything(),
function(x){
out <- suppressWarnings(max(x, na.rm = TRUE))
if(is.infinite(out)) out <- 0
out
}),
.groups = "keep") %>% dplyr::ungroup()
nodes <- out %>% tidygraph::activate(nodes) %>% as.data.frame()
tidygraph::tbl_graph(nodes, edges,
directed = is_directed(.data))
}
#' @rdname add_ties
#' @importFrom dplyr filter
#' @export
filter_ties <- function(.data, ...){
nodes <- edges <- NULL
out <- as_tidygraph(.data)
out %>% tidygraph::activate(edges) %>%
dplyr::filter(...) %>%
tidygraph::activate(nodes)
}
#' @rdname add_ties
#' @importFrom dplyr select
#' @export
select_ties <- function(.data, ...){
nodes <- edges <- NULL
out <- as_tidygraph(.data)
out %>% tidygraph::activate(edges) %>% dplyr::select(...) %>% activate(nodes)
}
#' @rdname add_ties
#' @importFrom dplyr summarise
#' @export
summarise_ties <- function(.data, ...){
out <- as_edgelist(.data) %>%
dplyr::summarise(..., .by = c("from","to")) %>%
as_tidygraph(twomode = is_twomode(.data))
out <- as_tidygraph(bind_node_attributes(out, .data))
if(!is_directed(.data)) out <- to_undirected(out)
out
}