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/
models.yml
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name: Test Models
on:
push:
branches:
- master
- main
pull_request:
branches:
- master
- main
jobs:
test-turing:
name: Test Turing Models
runs-on: ubuntu-latest
env:
JULIA_NUM_THREADS: "auto"
strategy:
matrix:
jl-file: [
"01-predictive_checks.jl",
"02-linear_regression-kidiq.jl",
"03-logistic_regression-wells.jl",
"04-ordinal_regression-esoph.jl",
"05-poisson_regression-roaches.jl",
"06-robust_linear_regression-duncan.jl",
#"07-robust_beta_binomial_regression-wells.jl", # FIXME: broken
#"08-robust_robit_regression-wells.jl", # FIXME: broken
"09-robust_negative_binomial_regression-roaches.jl",
"10-robust_zero_inflated_regression-negative_binomial-roaches.jl",
"10-robust_zero_inflated_regression-poisson-roaches.jl",
"11-sparse_horseshoe.jl",
"12-sparse_horseshoe_p.jl",
"13-sparse_finnish_horseshoe.jl",
"14-sparse_r2d2.jl",
"15-hierarchical_varying_intercept-cheese.jl",
"15-hierarchical_varying_intercept-non_centered-cheese.jl",
"16-hierarchical_varying_intercept_slope-cheese.jl",
#"17-model_comparison-roaches.jl", # FIXME: broken upstream in ParetoSmooth.jl
]
steps:
- name: Checkout repository
uses: actions/checkout@v4
- name: Install Nix
uses: DeterminateSystems/nix-installer-action@v11
- name: Cache Nix artifacts
uses: DeterminateSystems/magic-nix-cache-action@v6
- name: Test ${{ matrix.jl-file }}
run: |
nix develop -L . --command bash -c "julia -e 'using Pkg; Pkg.instantiate()'"
nix develop -L . --command bash -c "julia turing/${{ matrix.jl-file }}"
test-stan:
name: Test Stan Models
runs-on: ubuntu-latest
strategy:
matrix:
stan:
[
{
model: "01-predictive_checks-posterior",
data: "coin_flip.data.json",
},
{
model: "01-predictive_checks-prior",
data: "coin_flip.data.json",
},
{ model: "02-linear_regression-QR", data: "kidiq.data.json" },
{
model: "02-linear_regression-optimized",
data: "kidiq.data.json",
},
{ model: "02-linear_regression", data: "kidiq.data.json" },
{
model: "03-logistic_regression-optimized",
data: "wells.data.json",
},
{ model: "03-logistic_regression", data: "wells.data.json" },
{
model: "04-ordinal_regression-optimized",
data: "esoph.data.json",
},
{ model: "04-ordinal_regression", data: "esoph.data.json" },
{
model: "05-poisson_regression-optimized",
data: "roaches.data.json",
},
{ model: "05-poisson_regression", data: "roaches.data.json" },
{ model: "06-robust_linear_regression", data: "kidiq.data.json" },
{
model: "07-robust_beta_binomial_regression",
data: "wells.data.json",
},
{ model: "08-robust_robit_regression", data: "wells.data.json" },
{
model: "09-robust_negative_binomial_regression-optimized",
data: "roaches.data.json",
},
{
model: "09-robust_negative_binomial_regression",
data: "roaches.data.json",
},
{
model: "10-robust_zero_inflated_regression-negative_binomial-optimized",
data: "roaches.data.json",
},
{
model: "10-robust_zero_inflated_regression-negative_binomial",
data: "roaches.data.json",
},
{
model: "10-robust_zero_inflated_regression-poisson-optimized",
data: "roaches.data.json",
},
{
model: "10-robust_zero_inflated_regression-poisson",
data: "roaches.data.json",
},
{
model: "11-sparse_horseshoe_regression",
data: "sparse_regression.data.json",
},
{
model: "12-sparse_horseshoe_p_regression",
data: "sparse_regression.data.json",
},
{
model: "13-sparse_finnish_horseshoe_regression",
data: "sparse_regression.data.json",
},
{
model: "14-sparse_r2d2_regression",
data: "sparse_regression.data.json",
},
{
model: "15-hierarchical_varying_intercept-non_centered",
data: "cheese.data.json",
},
{
model: "15-hierarchical_varying_intercept",
data: "cheese.data.json",
},
{
model: "16-hierarchical_varying_intercept_slope",
data: "cheese.data.json",
},
{
model: "17-model_comparison-negative_binomial",
data: "roaches.data.json",
},
{ model: "17-model_comparison-poisson", data: "roaches.data.json" },
{
model: "17-model_comparison-zero_inflated-negative_binomial",
data: "roaches.data.json",
},
{
model: "17-model_comparison-zero_inflated-poisson",
data: "roaches.data.json",
},
]
steps:
- name: Checkout repository
uses: actions/checkout@v4
- name: Install Nix
uses: DeterminateSystems/nix-installer-action@v11
- name: Cache Nix artifacts
uses: DeterminateSystems/magic-nix-cache-action@v6
- name: Test ${{ matrix.stan.model }}
run: |
echo "Compiling: ${{ matrix.stan.model }}"
nix develop -L . --command bash -c "stan stan/${{ matrix.stan.model }}"
nix develop -L . --command bash -c "stan/${{ matrix.stan.model }} sample num_chains=4 data file=stan/${{ matrix.stan.data }}"
nix develop -L . --command bash -c "stansummary output_*.csv"