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susan.results.3
32 lines (31 loc) · 10.6 KB
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susan.results.3
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--------------------------------------------
['ASPN', 'CD163', 'COL10A1', 'COL11A1', 'CXCL9', 'FCGR3A', 'IGFBP1', 'NTS', 'TFPI2']
['ASPN', 'CD163', 'COL10A1', 'COL11A1', 'FCGR3A', 'IGFBP1']
['ASPN', 'COL10A1', 'COL11A1', 'FCGR3A', 'IGFBP1']
['ASPN', 'COL10A1', 'COL11A1', 'GABRB1', 'IGFBP1']
C=0.0040
Sparsity with L1 penalty: 99.96%
--------------------------------------------
['AKR1C1', 'ANGPTL7', 'ASPN', 'ATP1A2', 'BCHE', 'C15orf48', 'CA4', 'CD163', 'CILP', 'COL10A1', 'COL11A1', 'CXCL10', 'CXCL2', 'DPPA4', 'ETV7', 'FCGR3A', 'FGL1', 'GJB2', 'IGFBP1', 'MMP13', 'PAH', 'PCOLCE2', 'PPAPDC1A', 'RBP4', 'S100B', 'SDPR', 'SFRP1', 'TSLP', 'WISP1']
['ADAMDEC1', 'ANGPTL7', 'ASPN', 'ATP1A2', 'BCHE', 'CA4', 'CD163', 'COL10A1', 'COL11A1', 'CXCL13', 'CXCL2', 'CXCL3', 'DPPA4', 'FABP7', 'FGFBP1', 'GJB2', 'GPC3', 'HBE1', 'IGFBP1', 'IGSF10', 'MME', 'MMP13', 'P4HA3', 'SDPR', 'SFRP1', 'TFPI2', 'TNMD']
['ADAM23', 'ADAMDEC1', 'ANGPTL7', 'BUB1', 'C4BPA', 'CA4', 'COL10A1', 'COL11A1', 'G0S2', 'GJB2', 'IGFBP1', 'IGSF10', 'MMP11', 'MMP13', 'MYOC', 'NLGN1', 'OCA2', 'PPAPDC1A', 'RBP4', 'S100B', 'TFPI2', 'TSLP']
['ADAMDEC1', 'ANGPTL7', 'C15orf48', 'C16orf73', 'C20orf103', 'CA4', 'CALCR', 'CEACAM6', 'COL10A1', 'COL11A1', 'COL6A6', 'CXCL11', 'CXCL2', 'CXCL9', 'EHF', 'FGFBP1', 'FGL1', 'FIGF', 'GJB2', 'HBA2', 'KIAA1576', 'MMP11', 'MMP13', 'NLGN1', 'OCA2', 'PCDH17', 'PCOLCE2', 'PLA2G4A', 'PPAPDC1A', 'PTX3', 'S100B', 'SDPR', 'SDS', 'TFPI2', 'TSLP']
C=0.0200
Sparsity with L1 penalty: 99.84%
--------------------------------------------
['ACVR1C', 'ADAMDEC1', 'ADH4', 'AKR1C1', 'AMIGO2', 'ANKRD22', 'ANLN', 'AREG', 'ASPA', 'ASPN', 'BUB1', 'C6orf156', 'CA4', 'CEACAM6', 'CEP55', 'CES1', 'CITED1', 'COL10A1', 'COL11A1', 'CST1', 'CXCL11', 'CXCL2', 'CXCL3', 'DAZ4', 'FABP1', 'FAM111B', 'FAM3B', 'FLJ35773', 'FLJ45557', 'GGTA1', 'GJB2', 'GSTA2', 'HEMGN', 'HLA-DPB1', 'HMGCLL1', 'IGSF10', 'INHBA', 'JAKMIP1', 'KIF14', 'LRRC3B', 'MMP1', 'MMP11', 'MMP13', 'MMP3', 'MUCL1', 'NPNT', 'NPY2R', 'OCA2', 'PDK4', 'PPAPDC1A', 'PTPRR', 'S100B', 'S100P', 'SDPR', 'SEMA3A', 'SFRP1', 'SNCA', 'SULT2A1', 'SYT13', 'TDO2', 'TFPI2', 'TNMD', 'TSLP', 'USP44', 'VCX3A', 'WISP1']
['ABI3', 'ADH4', 'AKR1C3', 'ANGPTL7', 'AREG', 'ASPN', 'ATP1A2', 'C20orf103', 'C20orf39', 'CA4', 'CACHD1', 'CCL11', 'CEP55', 'COL10A1', 'COL11A1', 'COL1A1', 'COMP', 'CRB3', 'CTHRC1', 'CXCL11', 'DACT2', 'ECM2', 'EGR1', 'FABP7', 'FAM111B', 'FAM19A4', 'FGFBP1', 'FGL2', 'GAS2', 'GJB2', 'GRP', 'GSTA2', 'IGFBP1', 'INHBA', 'ISG15', 'LGALS12', 'LRRC3B', 'MAOA', 'MMP1', 'MMP10', 'MMP11', 'MMP3', 'MMP9', 'NUF2', 'PCDH9', 'PDK4', 'PLP1', 'PPAPDC1A', 'PRC1', 'RCN3', 'RPS4Y1', 'S100B', 'SCGB2A2', 'SDPR', 'SERPINA6', 'SERPINA7', 'SFRP1', 'SLC6A14', 'SMCR5', 'SPINK5', 'SYT13', 'TDO2', 'TFPI', 'TFPI2', 'TIMP4', 'TMED6', 'TNMD', 'TOP2A', 'TYR', 'WISP1']
['ABCA8', 'ACVR1C', 'ADH4', 'AREG', 'ASPN', 'BUB1', 'C15orf48', 'C1orf34', 'CA4', 'CAPSL', 'CEP55', 'CFD', 'CLDN5', 'COL10A1', 'COL11A1', 'CST1', 'CXCL10', 'CXCL11', 'DCD', 'ERP27', 'FABP7', 'FAM111B', 'FAM19A4', 'FGFBP1', 'FGL1', 'FLJ35773', 'GJB2', 'GLRA3', 'GSTA2', 'GYG2', 'HSD17B2', 'IGSF10', 'ISG15', 'ITM2A', 'KLHL13', 'KRT6B', 'MAOA', 'MMD', 'MMP11', 'MMP13', 'MMP3', 'NEK2', 'NR0B1', 'NUF2', 'OASL', 'OCA2', 'PPAPDC1A', 'RASEF', 'RP13-102H20.1', 'RSAD2', 'SCGB1D2', 'SDPR', 'SERPINA6', 'SERPINA7', 'SFRP1', 'SPC25', 'SPINK5', 'SYT13', 'TFPI', 'TFPI2', 'TNMD', 'TSLP', 'TSPAN8', 'USP44', 'VCX2', 'VCX3A', 'WISP1']
['ACVR1C', 'ADAMDEC1', 'ALDH1A1', 'ANGPTL7', 'ANKRD22', 'AREG', 'ATP1A2', 'B3GAT1', 'BUB1', 'C20orf103', 'CA4', 'CACHD1', 'CNTNAP3', 'COL10A1', 'COL11A1', 'COL1A1', 'COMP', 'CXCL2', 'CXCL9', 'DCDC2', 'DEPDC1B', 'DLG7', 'F2', 'FABP1', 'FABP7', 'FAM111B', 'FAM19A4', 'FGB', 'FGFBP1', 'FHL1', 'FIGF', 'GAS2', 'GJB2', 'GPC3', 'GUCY1A3', 'HSPB7', 'IGFBP1', 'IGSF10', 'INHBA', 'JAKMIP1', 'KIAA1257', 'KIF2C', 'KLHL13', 'LAMP3', 'MAGEC2', 'MME', 'MMP10', 'MMP11', 'MMP13', 'MMP3', 'MMP9', 'MS4A3', 'MUCL1', 'MYEOV', 'NR0B1', 'NUF2', 'P4HA3', 'PBK', 'PCOLCE2', 'PDZK1', 'PLA2G4A', 'POSTN', 'PPAPDC1A', 'PPEF1', 'PRLR', 'PTX3', 'PVRL4', 'RGS20', 'RPS4Y2', 'S100B', 'SERPINA6', 'SFRP1', 'SSTR1', 'SYT13', 'TFPI2', 'TNMD', 'TSLP', 'TSPAN8', 'UGT2B11', 'VCX3A', 'WISP1']
C=0.1000
Sparsity with L1 penalty: 99.60%
--------------------------------------------
['ABI3', 'ACTN2', 'ACVR1C', 'ADAMTSL4', 'ADH4', 'AIM2', 'AKR1C1', 'ALDH3A1', 'ANGPTL7', 'ANKRD22', 'ANLN', 'APOBEC3A', 'AREG', 'ARPP-21', 'ART4', 'ASPN', 'ATP1A2', 'BUB1', 'C10orf140', 'C10orf81', 'C15orf48', 'C20orf103', 'C20orf26', 'C20orf39', 'C20orf96', 'C2orf54', 'C4orf19', 'C7orf16', 'C9orf52', 'CA4', 'CACHD1', 'CALCRL', 'CALML5', 'CASC5', 'CBLC', 'CCDC125', 'CCDC19', 'CCDC85A', 'CCL11', 'CCL28', 'CDCA3', 'CES1', 'CFD', 'CITED1', 'CLDND2', 'CLEC3A', 'CLEC4E', 'CLIC6', 'COL10A1', 'COL11A1', 'COL1A1', 'COL1A2', 'COL7A1', 'COMP', 'CPA6', 'CST1', 'CTHRC1', 'CTSG', 'CTSK', 'CXCL11', 'CXCL2', 'CXCL9', 'CYP26A1', 'CYP3A5', 'DCDC2', 'DCN', 'DENND1B', 'DKFZp762E1312', 'DLG7', 'DLK1', 'DNER', 'DPT', 'DQX1', 'EPHA3', 'ETV7', 'F2RL2', 'FABP7', 'FAM111B', 'FAM19A4', 'FBXL5', 'FCGR3A', 'FEZ1', 'FGFBP1', 'FGL1', 'FHL1', 'FLJ35773', 'FLJ45557', 'FLRT3', 'FN1', 'FUT9', 'GAS2', 'GBP4', 'GGH', 'GHR', 'GJB2', 'GLRA3', 'GPC3', 'GPER', 'GPR64', 'GPR65', 'GPR88', 'GSTA2', 'GSTA3', 'HBG1', 'HIST2H2AA3', 'HLA-B', 'HOXC12', 'IBSP', 'IGFBP1', 'IGSF10', 'INHBA', 'IQCA', 'IRF6', 'JAKMIP1', 'KIAA0101', 'KIAA1199', 'KIAA1257', 'KLHL13', 'LAMP3', 'LGALS12', 'LHFPL4', 'LHX2', 'LOC152573', 'LRRC32', 'LRRC3B', 'MAGEC1', 'MAL', 'MAOA', 'MKI67', 'MMP1', 'MMP11', 'MMP12', 'MMP13', 'MMP3', 'MMP9', 'MS4A7', 'MUCL1', 'MYEOV', 'NEK2', 'NFIB', 'NMU', 'NPTX2', 'NR0B1', 'NUF2', 'NUP62CL', 'NXPH1', 'OXGR1', 'P4HA3', 'PCDH17', 'PCOLCE2', 'PCSK1', 'PDK4', 'PDZK1', 'PFKFB1', 'PGDS', 'PHACTR1', 'POSTN', 'PPAPDC1A', 'PPEF1', 'PPM1J', 'PPP1R1B', 'PRAME', 'PRRG4', 'PTHR1', 'PTX3', 'RASGRP3', 'RGS1', 'RGS22', 'RHBDL3', 'RSAD2', 'RTP4', 'S100B', 'SAA1', 'SCUBE2', 'SDPR', 'SERPINA6', 'SERPINE1', 'SFRP4', 'SLC1A1', 'SLC27A2', 'SNCA', 'SPC25', 'SPINT2', 'SPRY2', 'SPTA1', 'SUSD4', 'SYCE1', 'SYT13', 'TACC3', 'TBX21', 'TDO2', 'TF', 'TFF3', 'TFPI2', 'TGFBR3', 'TK1', 'TNFSF4', 'TNMD', 'TNNT1', 'TRIM74', 'TRPV6', 'TSPAN8', 'USP43', 'UTS2', 'VWCE', 'WISP1', 'WNT2', 'WNT7B', 'WT1', 'ZBED2']
['AADAC', 'ABCC11', 'ACAN', 'ACF', 'ACTN2', 'ACVR1C', 'ADAM2', 'ADH1B', 'ADH4', 'ADRA2A', 'AGMAT', 'AKR1C1', 'AKR1C3', 'ALB', 'ALDH2', 'AMIGO2', 'ANGPTL5', 'ANKRD22', 'ANXA1', 'APOA1', 'AREG', 'ART4', 'ASAM', 'ASGR2', 'ASPN', 'ASXL3', 'ATP1A2', 'BMP6', 'BMPR1B', 'BPIL1', 'C14orf161', 'C15orf48', 'C16orf59', 'C1orf135', 'C1orf172', 'C20orf103', 'C20orf174', 'C20orf39', 'C4orf31', 'C9orf52', 'CA4', 'CAPSL', 'CBLN2', 'CCDC19', 'CCDC26', 'CD69', 'CDH16', 'CDH2', 'CENPF', 'CENPL', 'CEP55', 'CES1', 'CFD', 'CFHR3', 'CHL1', 'CHST6', 'CKS2', 'CLGN', 'COL10A1', 'COL11A1', 'COL1A1', 'COL4A6', 'COL6A6', 'CPA6', 'CSN1S1', 'CST1', 'CXCL11', 'CXCL12', 'CXCL9', 'DGAT2', 'DKK1', 'DKK4', 'DNAJC5B', 'DSG3', 'EDN2', 'EGR2', 'ELA2', 'EPDR1', 'EREG', 'ERP27', 'F13A1', 'F2RL2', 'FABP7', 'FAM111B', 'FAM112B', 'FAM19A4', 'FAM54A', 'FAM70A', 'FAM79B', 'FAM84A', 'FBXL16', 'FGB', 'FGFBP1', 'FGL2', 'FHL1', 'FIBIN', 'FIGF', 'FLJ35773', 'FLJ45557', 'FLRT3', 'FN1', 'FUT9', 'GABRB3', 'GAS1', 'GAS2', 'GJB2', 'GJB7', 'GLRA3', 'GPR64', 'GPR88', 'GREM1', 'GRP', 'GSTA2', 'GSTA3', 'HIST2H2AA3', 'HMGA2', 'HMGCLL1', 'HRASLS', 'IBSP', 'IGSF10', 'INADL', 'INHBA', 'IRX2', 'ISG15', 'JAKMIP1', 'KIF14', 'KIF23', 'KLK12', 'KLRB1', 'KLRC2', 'KRT25', 'KRT6B', 'KRT7', 'LHX2', 'LOC152573', 'LOC441376', 'MAGEA1', 'MCM4', 'MMP1', 'MMP10', 'MMP11', 'MMP13', 'MMP3', 'MMP7', 'MMP9', 'MNX1', 'MS4A7', 'MUCL1', 'MYEOV', 'MYT1', 'NCAPH', 'NETO2', 'NLGN1', 'NPTX2', 'NPY1R', 'NUF2', 'NUP62CL', 'P2RY2', 'PCDH17', 'PCDH9', 'PDK4', 'PIP', 'PLSCR4', 'PMAIP1', 'POU2AF1', 'PPAPDC1A', 'PRAME', 'PTGIR', 'PTTG1', 'PTX3', 'PXDNL', 'RBP4', 'REXO1L1', 'RGS20', 'RP11-35N6.1', 'RSAD2', 'S100B', 'SAA1', 'SAA2', 'SCGB1D2', 'SCUBE2', 'SELE', 'SERPINA6', 'SFRP2', 'SGCG', 'SLC22A3', 'SLCO1A2', 'SPANXD', 'SPINK5', 'SUSD3', 'SYCE1', 'SYT13', 'TACSTD1', 'TCEAL7', 'TFPI', 'TFPI2', 'THRSP', 'TMED6', 'TPX2', 'TSLP', 'TYMS', 'VCX2', 'VCX3A']
['AADAC', 'ACVR1C', 'ADAM2', 'ADAMDEC1', 'ADAMTS5', 'ADH4', 'AKR1C1', 'AKR1C3', 'ALDH1A1', 'ALPK2', 'AMIGO2', 'ANGPTL7', 'AREG', 'ATP1A2', 'BCHE', 'BMPR1B', 'C20orf103', 'CA4', 'CAPSL', 'CEACAM6', 'CES1', 'CFB', 'CFD', 'CLGN', 'COL10A1', 'COL11A1', 'COL1A1', 'COMP', 'CST1', 'CTCFL', 'CTHRC1', 'CXCL11', 'CXCL9', 'DACT2', 'DNTT', 'EREG', 'ERP27', 'FAM111B', 'FAM19A4', 'FAM3B', 'FCGR3A', 'FGB', 'FGFBP1', 'FLJ45557', 'FXYD1', 'G0S2', 'GAS2', 'GDF10', 'GIMAP4', 'GJB2', 'GJB7', 'GLRA3', 'GPC3', 'GPR64', 'GPX2', 'GSTA2', 'HIST2H2AA3', 'HMGCLL1', 'IGFBP1', 'IGSF10', 'IRF6', 'ISG15', 'ITM2A', 'KIF2C', 'KLRC2', 'LGALS12', 'LOC152573', 'LRRC3B', 'MATN2', 'MMP1', 'MMP11', 'MMP13', 'MMP3', 'MMP7', 'MS4A3', 'MUC1', 'MYEOV', 'MYOC', 'NPNT', 'NUF2', 'OASL', 'OCA2', 'PDK4', 'PID1', 'PIP', 'PLXDC2', 'POPDC3', 'PPAPDC1A', 'PTHLH', 'PTX3', 'RASEF', 'RP13-102H20.1', 'S100B', 'SDPR', 'SELE', 'SGCG', 'SPP1', 'SRPX', 'SSTR1', 'TFPI', 'TFPI2', 'TNMD', 'TSLP', 'VCX2', 'WISP1']
['ABCG2', 'ACSM1', 'ACTN2', 'ACVR1C', 'ADAM2', 'ALAS2', 'AMIGO2', 'AMT', 'ANKRD30A', 'APOB', 'AREG', 'BAG2', 'BEX2', 'BMPR1B', 'BUB1', 'C10orf81', 'C15orf48', 'C20orf103', 'C3orf57', 'C4orf19', 'C4orf31', 'C7', 'C9orf52', 'CA4', 'CACHD1', 'CAPSL', 'CCDC88A', 'CCNB1', 'CDC2', 'CDKN2A', 'CDKN3', 'CENPF', 'CEP55', 'CES1', 'CFD', 'CFH', 'CITED1', 'CLDN14', 'CLGN', 'COL10A1', 'COL11A1', 'COL4A6', 'CRLF1', 'CTHRC1', 'CYTL1', 'DACT2', 'DCD', 'DEPDC1B', 'DNTT', 'DSG3', 'EGFL6', 'EGR1', 'EREG', 'F12', 'F2RL2', 'FAM111B', 'FAM19A4', 'FAM3B', 'FCGR3A', 'FGB', 'FGFBP1', 'FGL1', 'FHL1', 'FLJ21986', 'FLJ35773', 'FUT9', 'GIMAP4', 'GJB2', 'GJB7', 'GLDN', 'GPR87', 'GSTA2', 'GSTA3', 'HBA2', 'HHATL', 'HIST2H2AA3', 'HKDC1', 'HLA-DQA1', 'HOXB6', 'HOXB9', 'HRASLS', 'IGF1', 'IGFL2', 'IL20RA', 'INHBA', 'IRX2', 'ISG15', 'JAKMIP1', 'KATNAL2', 'KCNC2', 'KCND2', 'KIAA1199', 'KIF20A', 'KIT', 'KLF4', 'KRT7', 'LAMP3', 'LHX2', 'LIN28', 'LOC152573', 'LRRC3B', 'LRRN1', 'MAGEC2', 'MAOA', 'MAOB', 'MGC5566', 'MKI67', 'MMP11', 'MMP12', 'MMP13', 'MMP3', 'MNX1', 'MS4A8B', 'MUC1', 'MUCL1', 'MYEOV', 'MYT1', 'NEFH', 'NEFM', 'NPTX1', 'NPY5R', 'NR0B1', 'NUDT11', 'NUF2', 'NUP62CL', 'OASL', 'OSR2', 'PAFAH1B3', 'PCDH17', 'PCSK1', 'PCSK9', 'PDK4', 'PDZK1', 'PLA2G4A', 'PLEKHH2', 'PMAIP1', 'PPAPDC1A', 'PPEF1', 'PRRG4', 'PTGS2', 'PTPRN2', 'RHOXF1', 'S100B', 'SAA1', 'SCGB1D1', 'SCGB1D2', 'SEMA3A', 'SERPINE2', 'SFRP2', 'SLC1A1', 'SLC4A4', 'SLC6A15', 'SPC25', 'SPINK5', 'STBD1', 'SYCE1', 'SYT13', 'TF', 'TFPI', 'TLR8', 'TMED6', 'TMEM16C', 'TMSL8', 'TNFSF4', 'TNNT1', 'TNS4', 'TPM1', 'UBE2C', 'VCX2', 'VCX3A', 'VWCE', 'WISP1', 'WNT2', 'ZBED2']
C=0.5000
Sparsity with L1 penalty: 99.03%
[ 0.004 0.02 0.1 0.5 ]
[88.97253620628753, 96.89642151209428, 99.24799465240642, 99.44023662096417]
[100.0, 100.0, 99.8076923076923, 99.80314960629921]