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species_list.txt
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species_list.txt
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Species Assembly Full name Source
Ccos d101g Chymomyza costata Kim BY et al., 2021
Daca d101g Drosophila acanthoptera Kim BY et al., 2021
Dalb GCF_009650485 Drosophila albomicans NCBI RefSeq
Damb d101g Drosophila ambigua Kim BY et al., 2021
Dame d101g Drosophila americana Kim BY et al., 2021
Dana d101g Drosophila ananassae Kim BY et al., 2021
Dana d15genomes Drosophila ananassae Miller DE et al., 2018
Dana droAna2 Drosophila ananassae UCSC
Dana GCF_003285975 Drosophila ananassae NCBI RefSeq
Dana GCF_017639315 Drosophila ananassae NCBI RefSeq
Dara d101g Drosophila arawakana Kim BY et al., 2021
Dari GCF_001654025 Drosophila arizonae NCBI RefSeq
Dath GCA_008121215 Drosophila athabasca NCBI GenBank
Dazt GCA_005876895 Drosophila azteca NCBI GenBank
Dbia d101g Drosophila biarmipes Kim BY et al., 2021
Dbia d15genomes Drosophila biarmipes Miller DE et al., 2018
Dbia GCF_000233415 Drosophila biarmipes NCBI RefSeq
Dbia GCF_018148935 Drosophila biarmipes NCBI RefSeq
Dbif GCA_009664405 Drosophila bifasciata NCBI GenBank
Dbip d101g Drosophila bipectinata Kim BY et al., 2021
Dbip d15genomes Drosophila bipectinata Miller DE et al., 2018
Dbip GCF_000236285 Drosophila bipectinata NCBI RefSeq
Dbip GCF_018153845 Drosophila bipectinata NCBI RefSeq
Dbir GCA_008042755 Drosophila birchii NCBI GenBank
Dboc d101g Drosophila bocqueti Kim BY et al., 2021
Dbro d101g Drosophila bromeliae Kim BY et al., 2021
Dbun GCA_008042815 Drosophila bunnanda NCBI GenBank
Dbus GCF_011750605 Drosophila busckii NCBI RefSeq
Dcard d101g Drosophila cardini Kim BY et al., 2021
Dcarr d101g Drosophila carrolli Kim BY et al., 2021
Ddun d101g Drosophila dunni Kim BY et al., 2021
Dele d101g Drosophila elegans Kim BY et al., 2021
Dele GCF_000224195 Drosophila elegans NCBI RefSeq
Dele GCF_018152505 Drosophila elegans NCBI RefSeq
Dequ d101g Drosophila equinoxialis Kim BY et al., 2021
Derc d101g Drosophila ercepeae Kim BY et al., 2021
Dere d101g Drosophila erecta Kim BY et al., 2021
Dere d15genomes Drosophila erecta Miller DE et al., 2018
Dere droEre1 Drosophila erecta UCSC
Dere GCF_003286155 Drosophila erecta NCBI RefSeq
Deug d101g Drosophila eugracilis Kim BY et al., 2021
Deug d15genomes Drosophila eugracilis Miller DE et al., 2018
Deug GCF_000236325 Drosophila eugracilis NCBI RefSeq
Deug GCF_018153835 Drosophila eugracilis NCBI RefSeq
Dezo_mas d101g Drosophila ezoana.masurca Kim BY et al., 2021
Dfic d101g Drosophila ficusphila Kim BY et al., 2021
Dfic GCF_000220665 Drosophila ficusphila NCBI RefSeq
Dfic GCF_018152265 Drosophila ficusphila NCBI RefSeq
Dfun d101g Drosophila funebris Kim BY et al., 2021
Dfuy d101g Drosophila fuyamai Kim BY et al., 2021
Dgri d101g Drosophila grimshawi Kim BY et al., 2021
Dgri droGri1 Drosophila grimshawi UCSC
Dgri GCF_000005155 Drosophila grimshawi NCBI RefSeq
Dgri GCF_018153295 Drosophila grimshawi NCBI RefSeq
Dgua GCF_900245975 Drosophila guanche NCBI RefSeq
Dhyd GCF_003285905 Drosophila hydei NCBI RefSeq
Dimm d101g_fk05 Drosophila immigrans Kim BY et al., 2021
Dimm d101g_kari17 Drosophila immigrans Kim BY et al., 2021
Dinn GCF_004354385 Drosophila innubila NCBI RefSeq
Dins d101g Drosophila insularis Kim BY et al., 2021
Djam d101g Drosophila jambulina Kim BY et al., 2021
Dkan GCA_008042475 Drosophila kanapiae NCBI GenBank
Dkik d101g Drosophila kikkawai Kim BY et al., 2021
Dkik GCF_000224215 Drosophila kikkawai NCBI RefSeq
Dkik GCF_018152535 Drosophila kikkawai NCBI RefSeq
Dkur d101g Drosophila kurseongensis Kim BY et al., 2021
Dlit d101g Drosophila littoralis Kim BY et al., 2021
Dlow GCA_008121275 Drosophila lowei NCBI GenBank
Dmal_mal d101g Drosophila m.malerkotliana Kim BY et al., 2021
Dmal_pal d101g Drosophila m.pallens Kim BY et al., 2021
Dmau d101g Drosophila mauritiana Kim BY et al., 2021
Dmau d15genomes Drosophila mauritiana Miller DE et al., 2018
Dmau GCF_004382145 Drosophila mauritiana NCBI RefSeq
Dmel d101g Drosophila melanogaster Kim BY et al., 2021
Dmel dm6 Drosophila melanogaster UCSC
Dmir GCF_003369915 Drosophila miranda NCBI RefSeq
Dmoj d101g Drosophila mojavensis Kim BY et al., 2021
Dmoj d15genomes Drosophila mojavensis Miller DE et al., 2018
Dmoj droMoj2 Drosophila mojavensis UCSC
Dmoj GCF_000005175 Drosophila mojavensis NCBI RefSeq
Dmoj GCF_018153725 Drosophila mojavensis NCBI RefSeq
Dmur d101g Drosophila murphyi Kim BY et al., 2021
Dnan GCA_020883555 Drosophila nannoptera NCBI GenBank
Dnav GCF_001654015 Drosophila navojoa NCBI RefSeq
Dneo d101g Drosophila neocordata Kim BY et al., 2021
Dnov GCF_003285875 Drosophila novamexicana NCBI RefSeq
Dobs d101g Drosophila obscura Kim BY et al., 2021
Dobs GCF_002217835 Drosophila obscura NCBI RefSeq
Dobs GCF_018151105 Drosophila obscura NCBI RefSeq
Dore GCA_005876975 Drosophila orena NCBI GenBank
Dosh d101g Drosophila oshimai Kim BY et al., 2021
Dpac GCA_020883565 Drosophila pachea NCBI GenBank
Dpar d101g Drosophila parabipectinata Kim BY et al., 2021
Dpau d101g_L06 Drosophila paulistorum Kim BY et al., 2021
Dpau d101g_L12 Drosophila paulistorum Kim BY et al., 2021
Dpec GCA_008042775 Drosophila pectinifera NCBI GenBank
Dper d101g Drosophila persimilis Kim BY et al., 2021
Dper d15genomes Drosophila persimilis Miller DE et al., 2018
Dper droPer1 Drosophila persimilis UCSC
Dper GCF_003286085 Drosophila persimilis NCBI RefSeq
Dpro d101g Drosophila prosaltans Kim BY et al., 2021
Dpru d101g Drosophila pruinosa Kim BY et al., 2021
Dpsea_nig d101g Drosophila p.nigrens Kim BY et al., 2021
Dpsea_pse d101g Drosophila p.pseudoananassae Kim BY et al., 2021
Dpse d101g Drosophila pseudoobscura Kim BY et al., 2021
Dpse d15genomes Drosophila pseudoobscura Miller DE et al., 2018
Dpse dp3 Drosophila pseudoobscura UCSC
Dpse GCF_009870125 Drosophila pseudoobscura NCBI RefSeq
Dqua d101g Drosophila quadrilineata Kim BY et al., 2021
Drepa d101g Drosophila repleta Kim BY et al., 2021
Drepo d101g Drosophila repletoides Kim BY et al., 2021
Drho d101g Drosophila rhopaloa Kim BY et al., 2021
Drho GCF_000236305 Drosophila rhopaloa NCBI RefSeq
Drho GCF_018152115 Drosophila rhopaloa NCBI RefSeq
Druf d101g Drosophila rufa Kim BY et al., 2021
Dsal d101g Drosophila saltans Kim BY et al., 2021
Dsan GCF_016746245 Drosophila santomea NCBI RefSeq
Dsec d101g Drosophila sechellia Kim BY et al., 2021
Dsec d15genomes Drosophila sechellia Miller DE et al., 2018
Dsec droSec1 Drosophila sechellia UCSC
Dsec GCF_004382195 Drosophila sechellia NCBI RefSeq
Dser GCA_008042835 Drosophila serrata NCBI GenBank
Dser GCF_002093755 Drosophila serrata NCBI RefSeq
Dsim d101g Drosophila simulans Kim BY et al., 2021
Dsim d15genomes Drosophila simulans Miller DE et al., 2018
Dsim droSim1 Drosophila simulans UCSC
Dsim GCF_000754195 Drosophila simulans NCBI RefSeq
Dsim GCF_016746395 Drosophila simulans NCBI RefSeq
Dsp_affcha d101g Drosophila sp.affchauvacae Kim BY et al., 2021
Dsp_mus d101g Drosophila sp.mushsaotome Kim BY et al., 2021
Dspr d101g Drosophila sproati Kim BY et al., 2021
Dstu d101g Drosophila sturtevanti Kim BY et al., 2021
Dsub d101g Drosophila subobscura Kim BY et al., 2021
Dsub GCF_008121235 Drosophila subobscura NCBI RefSeq
Dsubp d101g_L1 Drosophila subpulchrella Kim BY et al., 2021
Dsubp GCF_014743375 Drosophila subpulchrella NCBI RefSeq
Dsuc d101g Drosophila sucinea Kim BY et al., 2021
Dsuz GCF_000472105 Drosophila suzukii NCBI RefSeq
Dsuz GCF_013340165 Drosophila suzukii NCBI RefSeq
Dtak d101g Drosophila takahashii Kim BY et al., 2021
Dtak GCF_000224235 Drosophila takahashii NCBI RefSeq
Dtak GCF_018152695 Drosophila takahashii NCBI RefSeq
Dtei d101g_2733 Drosophila teissieri Kim BY et al., 2021
Dtei d101g_CT02 Drosophila teissieri Kim BY et al., 2021
Dtei GCF_016746235 Drosophila teissieri NCBI RefSeq
Dtri d101g Drosophila triauraria Kim BY et al., 2021
Dtri d15genomes Drosophila triauraria Miller DE et al., 2018
Dtris d101g Drosophila tristis Kim BY et al., 2021
Dtro d101g Drosophila tropicalis Kim BY et al., 2021
Dvar d101g Drosophila varians Kim BY et al., 2021
Dvir d101g Drosophila virilis Kim BY et al., 2021
Dvir d15genomes Drosophila virilis Miller DE et al., 2018
Dvir droVir2 Drosophila virilis UCSC
Dvir GCF_003285735 Drosophila virilis NCBI RefSeq
Dwas d101g Drosophila wassermani Kim BY et al., 2021
Dwil d101g Drosophila willistoni Kim BY et al., 2021
Dwil d15genomes Drosophila willistoni Miller DE et al., 2018
Dwil GCF_000005925 Drosophila willistoni NCBI RefSeq
Dwil GCF_018902025 Drosophila willistoni NCBI RefSeq
Dyak d101g Drosophila yakuba Kim BY et al., 2021
Dyak d15genomes Drosophila yakuba Miller DE et al., 2018
Dyak droYak2 Drosophila yakuba UCSC
Dyak GCF_000005975 Drosophila yakuba NCBI RefSeq
Dyak GCF_016746365 Drosophila yakuba NCBI RefSeq
Lcla d101g Lordiphosa clarofinis Kim BY et al., 2021
Lcol d101g Lordiphosa collinella Kim BY et al., 2021
Lmag d101g Lordiphosa magnipectinata Kim BY et al., 2021
Lmom d101g Lordiphosa mommai Kim BY et al., 2021
Lsta d101g Lordiphosa stackelbergi Kim BY et al., 2021
Lvar d101g Lordiphosa varia Kim BY et al., 2021
Sgra d101g Scaptomyza graminum Kim BY et al., 2021
Shsu d101g Scaptomyza hsui Kim BY et al., 2021
Smon d101g Scaptomyza montana Kim BY et al., 2021
Spal d101g Scaptomyza pallida Kim BY et al., 2021
Zafr d101g Zaprionus africanus Kim BY et al., 2021
Zcam d101g Zaprionus camerounensis Kim BY et al., 2021
Zcap d101g Zaprionus capensis Kim BY et al., 2021
Zdav d101g Zaprionus davidi Kim BY et al., 2021
Zgab d101g Zaprionus gabonicus Kim BY et al., 2021
Zghe d101g Zaprionus ghesquierei Kim BY et al., 2021
Zind d101g_16GNV01 Zaprionus indianus Kim BY et al., 2021
Zind d101g_BS02 Zaprionus indianus Kim BY et al., 2021
Zind d101g_CDD18 Zaprionus indianus Kim BY et al., 2021
Zind d101g_RCR04 Zaprionus indianus Kim BY et al., 2021
Zine d101g Zaprionus inermis Kim BY et al., 2021
Zkol d101g Zaprionus kolodkinae Kim BY et al., 2021
Zlac d101g Zaprionus lachaisei Kim BY et al., 2021
Znig d101g Zaprionus nigranus Kim BY et al., 2021
Zorn d101g Zaprionus ornatus Kim BY et al., 2021
Ztar d101g Zaprionus taronus Kim BY et al., 2021
Ztsa d101g Zaprionus tsacasi Kim BY et al., 2021
Ztsa d101g_car7-4 Zaprionus tsacasi Kim BY et al., 2021
Zvit d101g Zaprionus vittiger Kim BY et al., 2021