Installation problem in MacBook Pro 10.14

[lgalbany]

This is a summary of a number of problems I found when installing the pipeline in a MacBook Pro with the 10.14 OSX version.

First, all PESSTO... routines failed giving this error:

ERROR (556, "No entry in device capabilities file for device (xterm-256color)")

which I managed to solve by running 'mkiraf' by hand with 'xgterm' as a term type.

After that, I got a different error:

dyld: Library not loaded: @rpath/libfftw3f.3.dylib
Referenced from: /Users/lluis/anaconda3/envs/iraf27/bin/sex
Reason: Incompatible library version: sex requires version 9.0.0 or later, but libfftw3f.3.dylib provides version 8.0.0
sh: line 1: 26673 Abort trap: 6 sex snunt121_20120420_B639_59184_1.fits -c default.sex > _logsex
Killing IRAF task `fields'
Error running IRAF task fields
IRAF task terminated abnormally
ERROR (741, "Cannot open file (detections.cat)")

Apparently the problem was with the fftw library. I solved this problem by installing the fftw and atlas libraries and sextractor manually, downloading the tar file from the developer webpage. Once installed I removed the sextractor version from conda.

Finally, I found a new error:

EXTRACTION USING IRAF TASK APALL

Find apertures for tAT2020pvb_20201122_Gr16_OG530_slit1.0_1? ('yes'):
Resize apertures for tAT2020pvb_20201122_Gr16_OG530_slit1.0_1? ('yes'):
Edit apertures for tAT2020pvb_20201122_Gr16_OG530_slit1.0_1? ('yes'):
2020-12-02 14:19:32.302 python[37274:5246348] -[NSApplication macMinorVersion]: unrecognized selector sent to instance 0x7fb6c98510c0
2020-12-02 14:19:32.304 python[37274:5246348] *** Terminating app due to uncaught exception 'NSInvalidArgumentException', reason: '-[NSApplication macMinorVersion]: unrecognized selector sent to instance 0x7fb6c98510c0'
*** First throw call stack:
(
0 CoreFoundation 0x00007fff2c4e6a7d _exceptionPreprocess + 256
1 libobjc.A.dylib 0x00007fff56bdca17 objc_exception_throw + 48
2 CoreFoundation 0x00007fff2c560886 -[NSObject(NSObject) retain_OA] + 0
3 CoreFoundation 0x00007fff2c4888ef forwarding + 1485
4 CoreFoundation 0x00007fff2c488298 CF_forwarding_prep_0 + 120
5 libtk8.6.dylib 0x000000011011bdb9 SetCGColorComponents + 265
6 libtk8.6.dylib 0x000000011011c67a TkpGetColor + 250
7 libtk8.6.dylib 0x0000000110056aa9 Tk_GetColor + 153
8 libtk8.6.dylib 0x00000001100468e6 Tk_Get3DBorder + 134
9 libtk8.6.dylib 0x000000011004674f Tk_Alloc3DBorderFromObj + 127
10 libtk8.6.dylib 0x0000000110057fad DoObjConfig + 941
11 libtk8.6.dylib 0x0000000110057ae5 Tk_InitOptions + 357
12 libtk8.6.dylib 0x00000001100579c5 Tk_InitOptions + 69
13 libtk8.6.dylib 0x0000000110088b5c CreateFrame + 1548
14 libtk8.6.dylib 0x0000000110088e37 TkListCreateFrame + 151
15 libtk8.6.dylib 0x00000001100807f8 Initialize + 2168
16 tkinter.so 0x000000010feb5be4 Tcl_AppInit + 84
17 tkinter.so 0x000000010feb5448 Tkinter_Create + 1128
18 libpython2.7.dylib 0x00000001040c4894 PyEval_EvalFrameEx + 22980
19 libpython2.7.dylib 0x00000001040bec74 PyEval_EvalCodeEx + 2164
20 libpython2.7.dylib 0x0000000104040913 function_call + 355
21 libpython2.7.dylib 0x0000000104017e05 PyObject_Call + 101
22 libpython2.7.dylib 0x0000000104027202 instancemethod_call + 162
23 libpython2.7.dylib 0x0000000104017e05 PyObject_Call + 101
24 libpython2.7.dylib 0x00000001040c89cf PyEval_CallObjectWithKeywords + 159
25 libpython2.7.dylib 0x0000000104025194 PyInstance_New + 148
26 libpython2.7.dylib 0x0000000104017e05 PyObject_Call + 101
27 libpython2.7.dylib 0x00000001040c4518 PyEval_EvalFrameEx + 22088
28 libpython2.7.dylib 0x00000001040bec74 PyEval_EvalCodeEx + 2164
29 libpython2.7.dylib 0x00000001040c8fcd fast_function + 109
30 libpython2.7.dylib 0x00000001040c4339 PyEval_EvalFrameEx + 21609
31 libpython2.7.dylib 0x00000001040bec74 PyEval_EvalCodeEx + 2164
32 libpython2.7.dylib 0x00000001040be3f2 PyEval_EvalCode + 34
33 libpython2.7.dylib 0x00000001040dd134 PyImport_ExecCodeModuleEx + 212
34 libpython2.7.dylib 0x00000001040e0343 load_source_module + 995
35 libpython2.7.dylib 0x00000001040dfe0f import_submodule + 319
36 libpython2.7.dylib 0x00000001040df890 load_next + 272
37 libpython2.7.dylib 0x00000001040de67d PyImport_ImportModuleLevel + 589
38 libpython2.7.dylib 0x00000001040b9529 builtin___import + 153
39 libpython2.7.dylib 0x00000001040c4894 PyEval_EvalFrameEx + 22980
40 libpython2.7.dylib 0x00000001040bec74 PyEval_EvalCodeEx + 2164
41 libpython2.7.dylib 0x0000000104040913 function_call + 355
42 libpython2.7.dylib 0x0000000104017e05 PyObject_Call + 101
43 libpython2.7.dylib 0x00000001040c30b2 PyEval_EvalFrameEx + 16866
44 libpython2.7.dylib 0x00000001040bec74 PyEval_EvalCodeEx + 2164
45 libpython2.7.dylib 0x00000001040be3f2 PyEval_EvalCode + 34
46 libpython2.7.dylib 0x00000001040dd134 PyImport_ExecCodeModuleEx + 212
47 libpython2.7.dylib 0x00000001040e0343 load_source_module + 995
48 libpython2.7.dylib 0x00000001040dfe0f import_submodule + 319
49 libpython2.7.dylib 0x00000001040df890 load_next + 272
50 libpython2.7.dylib 0x00000001040de67d PyImport_ImportModuleLevel + 589
51 libpython2.7.dylib 0x00000001040b9529 builtin___import + 153
52 libpython2.7.dylib 0x00000001040c4894 PyEval_EvalFrameEx + 22980
53 libpython2.7.dylib 0x00000001040bec74 PyEval_EvalCodeEx + 2164
54 libpython2.7.dylib 0x0000000104040913 function_call + 355
55 libpython2.7.dylib 0x0000000104017e05 PyObject_Call + 101
56 libpython2.7.dylib 0x00000001040c30b2 PyEval_EvalFrameEx + 16866
57 libpython2.7.dylib 0x00000001040bec74 PyEval_EvalCodeEx + 2164
58 libpython2.7.dylib 0x00000001040c8fcd fast_function + 109
59 libpython2.7.dylib 0x00000001040c4339 PyEval_EvalFrameEx + 21609
60 libpython2.7.dylib 0x00000001040bec74 PyEval_EvalCodeEx + 2164
61 libpython2.7.dylib 0x00000001040be3f2 PyEval_EvalCode + 34
62 libpython2.7.dylib 0x00000001040dd134 PyImport_ExecCodeModuleEx + 212
63 libpython2.7.dylib 0x00000001040e0343 load_source_module + 995
64 libpython2.7.dylib 0x00000001040dfe0f import_submodule + 319
65 libpython2.7.dylib 0x00000001040df890 load_next + 272
66 libpython2.7.dylib 0x00000001040de67d PyImport_ImportModuleLevel + 589
67 libpython2.7.dylib 0x00000001040b9529 builtin___import + 153
68 libpython2.7.dylib 0x00000001040c4894 PyEval_EvalFrameEx + 22980
69 libpython2.7.dylib 0x00000001040bec74 PyEval_EvalCodeEx + 2164
70 libpython2.7.dylib 0x0000000104040913 function_call + 355
71 libpython2.7.dylib 0x0000000104017e05 PyObject_Call + 101
72 libpython2.7.dylib 0x00000001040c30b2 PyEval_EvalFrameEx + 16866
73 libpython2.7.dylib 0x00000001040bec74 PyEval_EvalCodeEx + 2164
74 libpython2.7.dylib 0x00000001040c8fcd fast_function + 109
75 libpython2.7.dylib 0x00000001040c4339 PyEval_EvalFrameEx + 21609
76 libpython2.7.dylib 0x00000001040bec74 PyEval_EvalCodeEx + 2164
77 libpython2.7.dylib 0x00000001040c8fcd fast_function + 109
78 libpython2.7.dylib 0x00000001040c4339 PyEval_EvalFrameEx + 21609
79 libpython2.7.dylib 0x00000001040bec74 PyEval_EvalCodeEx + 2164
80 libpython2.7.dylib 0x00000001040c8fcd fast_function + 109
81 libpython2.7.dylib 0x00000001040c4339 PyEval_EvalFrameEx + 21609
82 libpython2.7.dylib 0x00000001040bec74 PyEval_EvalCodeEx + 2164
83 libpython2.7.dylib 0x00000001040c8fcd fast_function + 109
84 libpython2.7.dylib 0x00000001040c4339 PyEval_EvalFrameEx + 21609
85 libpython2.7.dylib 0x00000001040bec74 PyEval_EvalCodeEx + 2164
86 libpython2.7.dylib 0x00000001040c8fcd fast_function + 109
87 libpython2.7.dylib 0x00000001040c4339 PyEval_EvalFrameEx + 21609
88 libpython2.7.dylib 0x00000001040bec74 PyEval_EvalCodeEx + 2164
89 libpython2.7.dylib 0x00000001040c8fcd fast_function + 109
90 libpython2.7.dylib 0x00000001040c4339 PyEval_EvalFrameEx + 21609
91 libpython2.7.dylib 0x00000001040bec74 PyEval_EvalCodeEx + 2164
92 libpython2.7.dylib 0x00000001040c8fcd fast_function + 109
93 libpython2.7.dylib 0x00000001040c4339 PyEval_EvalFrameEx + 21609
94 libpython2.7.dylib 0x00000001040bec74 PyEval_EvalCodeEx + 2164
95 libpython2.7.dylib 0x0000000104040913 function_call + 355
96 libpython2.7.dylib 0x0000000104017e05 PyObject_Call + 101
97 libpython2.7.dylib 0x00000001040c55a0 PyEval_EvalFrameEx + 26320
98 libpython2.7.dylib 0x00000001040bec74 PyEval_EvalCodeEx + 2164
99 libpython2.7.dylib 0x00000001040c8fcd fast_function + 109
100 libpython2.7.dylib 0x00000001040c4339 PyEval_EvalFrameEx + 21609
101 libpython2.7.dylib 0x00000001040bec74 PyEval_EvalCodeEx + 2164
102 libpython2.7.dylib 0x0000000104040913 function_call + 355
103 libpython2.7.dylib 0x0000000104017e05 PyObject_Call + 101
104 libpython2.7.dylib 0x00000001040c55a0 PyEval_EvalFrameEx + 26320
105 libpython2.7.dylib 0x00000001040bec74 PyEval_EvalCodeEx + 2164
106 libpython2.7.dylib 0x0000000104040913 function_call + 355
107 libpython2.7.dylib 0x0000000104017e05 PyObject_Call + 101
108 libpython2.7.dylib 0x0000000104027202 instancemethod_call + 162
109 libpython2.7.dylib 0x0000000104017e05 PyObject_Call + 101
110 libpython2.7.dylib 0x00000001040263ce instance_call + 110
111 libpython2.7.dylib 0x0000000104017e05 PyObject_Call + 101
112 libpython2.7.dylib 0x00000001040c4518 PyEval_EvalFrameEx + 22088
113 libpython2.7.dylib 0x00000001040bec74 PyEval_EvalCodeEx + 2164
114 libpython2.7.dylib 0x00000001040c8fcd fast_function + 109
115 libpython2.7.dylib 0x00000001040c4339 PyEval_EvalFrameEx + 21609
116 libpython2.7.dylib 0x00000001040c90b3 fast_function + 339
117 libpython2.7.dylib 0x00000001040c4339 PyEval_EvalFrameEx + 21609
118 libpython2.7.dylib 0x00000001040bec74 PyEval_EvalCodeEx + 2164
119 libpython2.7.dylib 0x00000001040bf138 PyEval_EvalFrameEx + 616
120 libpython2.7.dylib 0x00000001040bec74 PyEval_EvalCodeEx + 2164
121 libpython2.7.dylib 0x00000001040c8fcd fast_function + 109
122 libpython2.7.dylib 0x00000001040c4339 PyEval_EvalFrameEx + 21609
123 libpython2.7.dylib 0x00000001040bec74 PyEval_EvalCodeEx + 2164
124 libpython2.7.dylib 0x00000001040c8fcd fast_function + 109
125 libpython2.7.dylib 0x00000001040c4339 PyEval_EvalFrameEx + 21609
126 libpython2.7.dylib 0x00000001040bec74 PyEval_EvalCodeEx + 2164
127 libpython2.7.dylib 0x00000001040be3f2 PyEval_EvalCode + 34
128 libpython2.7.dylib 0x00000001040ebedd PyRun_FileExFlags + 157
129 libpython2.7.dylib 0x00000001040eba20 PyRun_SimpleFileExFlags + 816
130 libpython2.7.dylib 0x0000000104102409 Py_Main + 3513
131 libdyld.dylib 0x00007fff583aa3d5 start + 1
132 ??? 0x0000000000000004 0x0 + 4
)
libc++abi.dylib: terminating with uncaught exception of type NSException
Abort trap: 6
PANIC in `/Users/lluis/anaconda3/envs/pessto/iraf/noao/bin.macosx/x_apextract.e': Write to IPC with no reader

which I solved by following matplotlib/matplotlib#13414

Now it works!

[temuller]

The last error was also solved in issue #52.

Thanks, Lluís!