iPHLoc-ES: Identification of Bacteriophage Protein Locations using Evolutionary and Structural Features
No installation needed. Just download the files in a folder or download the iPHLoc-ES.tar.gz file and extract it into your local directory. following prerequisite are required to run the software:
- install python 3.4 or latest version
- install following python packages:
- numpy
- pandas
- pickle
- sklearn
Use the following commands from the terminal:
python3.4 predict.py PSSM SPD3 OPTION
Usage:/home/swakkhar/Dropbox/Protein-subcelluar localization/iPHLoc-ES/predict.py PSSM SPD3 OPTION
PSSM: PSSM file generated from PSI-BLAST
SPD3: SPD3 file generated from SPIDER3
OPTION = 0 for identification of cellular phages
OPTION = 1 for prediction of phage location