Adapt returned shell scripts to work with different HPC setup #2

Swarchal · 2020-01-27T10:03:06Z

staging is not required, but will it improve performance to operate on the scratch disks?
definitely single core as don't need to worry about memory limits
use singularity images rather than conda envs

Swarchal added this to To do in Bare-minimum-working Jan 27, 2020

Swarchal modified the milestone: bare minimum Jan 27, 2020

Swarchal added the bare minimum really need to do this to get it working label Jan 27, 2020

Swarchal added a commit that referenced this issue Jan 30, 2020

use singularity rather than conda (towards #2)

021abb0

Swarchal added a commit that referenced this issue Jan 30, 2020

import jdk and fix singularity typo (towards #2)

5a75f06

Swarchal added a commit that referenced this issue Jan 30, 2020

actually fix singularity path (towards #2)

99fb071

Swarchal moved this from To do to In progress in Bare-minimum-working Jan 31, 2020

Swarchal closed this as completed Jan 31, 2020

Bare-minimum-working automation moved this from In progress to Done Jan 31, 2020

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