fox.yaml

apiVersion: wlm.sylabs.io/v1alpha1
kind: SlurmJob
metadata:
  name: fox
spec:
  batch: |
    #!/bin/bash
    #SBATCH -J singularity-mpi
    #SBATCH -N 2 # total number of nodes
    #SBATCH --time=00:05:00
    git clone https://bitbucket.org/sashayakovtseva/foxs-algorithm.git fox
    singularity pull -U mpich.sif library://sashayakovtseva/default/mpich:3.1.4
    singularity exec mpich.sif make -C fox
    mpirun -n 9 singularity exec --pwd $PWD/fox mpich.sif ./main
    mkdir fox-result
    cp fox/A.txt fox-result
    cp fox/B.txt fox-result
    cp fox/C.txt fox-result
    cp fox/log* fox-result
    tar -czvf fox-result.tar.gz fox-result
    rm mpich.sif
    rm -rf fox-result
    rm -rf fox
  nodeSelector:
    wlm.sylabs.io/containers: singularity
  results:
    from: fox-result.tar.gz
    mount:
      name: nfs-storage
      nfs:
        server: 192.168.1.41
        path: /var/nfsshare/results