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setup.py
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setup.py
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#!/usr/bin/env python3
import setuptools
with open("README.md", "r", encoding="utf-8") as fh:
long_description = fh.read()
setuptools.setup(
name="transmorph",
version="0.2.8",
author="Aziz Fouché, Loïc Chadoutaud, Andrei Zinovyev (Institut Curie, Paris)",
author_email="aziz.fouche@curie.fr",
description="A unifying data integration framework.",
long_description=long_description,
long_description_content_type="text/markdown",
url="https://github.com/Risitop/transmorph",
packages=setuptools.find_packages(where="src"),
classifiers=[
"Programming Language :: Python :: 3",
"License :: OSI Approved :: MIT License",
"Operating System :: OS Independent",
],
package_dir={"": "src"},
include_package_data=True,
install_requires=[
"anndata>=0.8.0",
"cython",
"igraph",
"leidenalg",
"numpy>=1.22,<1.24",
"pre-commit",
"pot",
"pymde",
"pynndescent",
"scanpy",
"sccover",
"scikit-learn",
"scipy",
"stabilized-ica>=2.0",
"umap-learn",
],
python_requires=">=3.9",
)