Set int env values as str in singularity engine (#816)

getpopper · Apr 25, 2020 · 994c8ec · 994c8ec
1 parent 414f76e
commit 994c8ec
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/cli/popper/runner_host.py b/cli/popper/runner_host.py
@@ -422,7 +422,7 @@ def _singularity_start(self, step, cid):
 
         # set the environment variables
         for k, v in env.items():
-            os.environ[k] = v
+            os.environ[k] = str(v)
 
         args = step.get('args', None)
         runs = step.get('runs', None)

diff --git a/cli/popper/runner_slurm.py b/cli/popper/runner_slurm.py
@@ -191,7 +191,7 @@ def run(self, step):
     def _create_cmd(self, step, cid):
         env = SlurmRunner.prepare_environment(step)
         for k, v in env.items():
-            os.environ[k] = v
+            os.environ[k] = str(v)
 
         args = step.get('args', '')
         runs = step.get('runs', '')