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SUBERR793605.log
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SUBERR793605.log
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TrimmomaticPE: Started with arguments:
-threads 6 -phred33 ./unpack/SUBERR793605_1.fq.gz ./unpack/SUBERR793605_2.fq.gz ./trimmomatic/SUBERR793605_forward_paired.fq.gz ./trimmomatic/SUBERR793605_forward_unpaired.fq.gz ./trimmomatic/SUBERR793605_reverse_paired.fq.gz ./trimmomatic/SUBERR793605_reverse_unpaired.fq.gz ILLUMINACLIP:../database/NexteraPE-PE.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:30 MINLEN:100
java.io.FileNotFoundException: /media/sf_Shared_Folder/Study_project/Metagenome_Building/database/NexteraPE-PE.fa (No such file or directory)
at java.base/java.io.FileInputStream.open0(Native Method)
at java.base/java.io.FileInputStream.open(FileInputStream.java:219)
at java.base/java.io.FileInputStream.<init>(FileInputStream.java:157)
at org.usadellab.trimmomatic.fasta.FastaParser.parse(FastaParser.java:54)
at org.usadellab.trimmomatic.trim.IlluminaClippingTrimmer.loadSequences(IlluminaClippingTrimmer.java:110)
at org.usadellab.trimmomatic.trim.IlluminaClippingTrimmer.makeIlluminaClippingTrimmer(IlluminaClippingTrimmer.java:71)
at org.usadellab.trimmomatic.trim.TrimmerFactory.makeTrimmer(TrimmerFactory.java:32)
at org.usadellab.trimmomatic.Trimmomatic.createTrimmers(Trimmomatic.java:59)
at org.usadellab.trimmomatic.TrimmomaticPE.run(TrimmomaticPE.java:552)
at org.usadellab.trimmomatic.Trimmomatic.main(Trimmomatic.java:80)
Input Read Pairs: 14452 Both Surviving: 10434 (72.20%) Forward Only Surviving: 2624 (18.16%) Reverse Only Surviving: 343 (2.37%) Dropped: 1051 (7.27%)
TrimmomaticPE: Completed successfully