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Warning: Error in [[: attempt to select less than one element in get1index 1: runApp #15
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Hello! Thanks for sending example files, I could reproduce the error. The issue are the sample names, they start with a number and contain special characters ("-" the hyphen). There should have been some error messages, and definitely some checks in the software. Does it work when you use this exp. design? ( here I've appended an X in front of all samples, and removed special characters "-" with a dot ".") Best, |
Sebastian, |
I will have a look at this, I hope I can solve this until tomorrow. This error only affects FragPipe input. |
Thank you for your quick feedback. Also, I had to change the headers so that it fits amica's requirements but I think FragPipe changed the output in their recent upgrade: Nesvilab/FragPipe#774. The file now has Intensity and MaxLFQ Intensity. |
Hello Lan Anh, please try again, it should work now on the server, and the same code is also already on github. You did get an error message, that Relevant columns from FragPipe's output didn't change in their update, only a couple of Intensity columns have been removed. That's why amica complained about missing intensity columns. I've fixed this behavior, FragPipe v18 output is now automatically handled by amica. Please let me know, whether everything works for you. Best, |
Sebastian, |
Hello,
Thank you for developing this tool. I am using FragPipe output. I used to be able to use it but now I am stuck on a faded grey page after clicking on Analyze both on the web version and the R version. On the R version, in the terminal, this error is displayed
Warning: Error in [[: attempt to select less than one element in get1index 1: runApp
Could you help please ?
Thank you in advance for your help.
Input file firsttwolines.txt
Contrast file contrast.txt
Design file design.txt
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