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waited for 24 hours to process mergeMS2spectra(mymzxml). #1
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It did complete for me after about 12 hours but merged spectra has all 0 intensity? Any ideas what is going on?
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The function extractMS2spectra seem to work with the provided files on the package but does not process high-resolution DDA MS2 data. The function "extractMS2spectra" works and you can see the length of the list using the function list(mymzxml). But when you run mergeMS2spectra(mymzxml), the merging never completes on centroided DDA MS2 files in mzXML format.
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