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osqp build error #3

Closed
tdhock opened this issue Dec 8, 2023 · 8 comments
Closed

osqp build error #3

tdhock opened this issue Dec 8, 2023 · 8 comments

Comments

@tdhock
Copy link
Owner

tdhock commented Dec 8, 2023

not sure if we need to fix this, or osqp does

* installing *source* package 'osqp' ...
** package 'osqp' successfully unpacked and MD5 sums checked
** using staged installation
++ : /home/th798/R/R-devel
++ test -z /home/th798/R/R-devel
+++ /home/th798/R/R-devel/bin/R CMD config CC
++ CC=gcc
+++ /home/th798/R/R-devel/bin/R CMD config CFLAGS
++ CFLAGS='-g -O2'
+++ /home/th798/R/R-devel/bin/R CMD config CPPFLAGS
++ CPPFLAGS='-I/home/th798/.conda/envs/emacs1/include -I/home/th798/include'
+++ /home/th798/R/R-devel/bin/R CMD config CXX
++ CXX='g++ -std=gnu++17'
+++ /home/th798/R/R-devel/bin/R CMD config CXXFLAGS
++ CXXFLAGS='-g -O2'
+++ /home/th798/R/R-devel/bin/R CMD config LDFLAGS
++ LDFLAGS='-L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64'
+++ command -v cmake
++ '[' -x /home/th798/.conda/envs/emacs1/bin/cmake ']'
++ echo 'Making fixes to osqp_sources for CRAN'
Making fixes to osqp_sources for CRAN
++ cd src
++ /home/th798/R/R-devel/bin/Rscript ../inst/58f00bd_fixes/make_fixes.R
[1] TRUE
++ echo '-- Trying to build libosqp.a via cmake ...'
-- Trying to build libosqp.a via cmake ...
++ cd src/osqp_sources
++ mkdir -p build
++ cd build
++ cmake -DR_HOME=/home/th798/R/R-devel -DCMAKE_BUILD_TYPE=Release -DBUILD_SHARED_LIBS:bool=OFF -DCMAKE_POSITION_INDEPENDENT_CODE:bool=ON -DR_LANG=TRUE -DCMAKE_INSTALL_PREFIX:PATH=../../ ..
-- The C compiler identification is GNU 8.5.0
-- The CXX compiler identification is GNU 8.5.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/gcc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/g++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- We are on a Linux system
-- Embedded is OFF
-- Printing is ON
-- Profiling is ON
-- User interrupt is ON
-- Floats are OFF
-- Long integers (64bit) are ON
-- Code coverage is OFF
-- MKL Pardiso: ON
-- We are building the R interface
-- R exec is: /home/th798/bin/R
-- R root dir is: WARNING: ignoring environment value of R_HOME
/home/th798/lib64/R
-- R includes are in: R_INCLUDE_DIRS-NOTFOUND
-- Floats are OFF
-- Long integers (64bit) are ON
-- Configuring done
CMake Error: The following variables are used in this project, but they are set to NOTFOUND.
Please set them or make sure they are set and tested correctly in the CMake files:
R_INCLUDE_DIRS (ADVANCED)
   used as include directory in directory /tmp/th798/6801141/RtmpD98bu0/R.INSTALL257ae078b61df9/osqp/src/osqp_sources
   used as include directory in directory /tmp/th798/6801141/RtmpD98bu0/R.INSTALL257ae078b61df9/osqp/src/osqp_sources
   used as include directory in directory /tmp/th798/6801141/RtmpD98bu0/R.INSTALL257ae078b61df9/osqp/src/osqp_sources
   used as include directory in directory /tmp/th798/6801141/RtmpD98bu0/R.INSTALL257ae078b61df9/osqp/src/osqp_sources
   used as include directory in directory /tmp/th798/6801141/RtmpD98bu0/R.INSTALL257ae078b61df9/osqp/src/osqp_sources
   used as include directory in directory /tmp/th798/6801141/RtmpD98bu0/R.INSTALL257ae078b61df9/osqp/src/osqp_sources
   used as include directory in directory /tmp/th798/6801141/RtmpD98bu0/R.INSTALL257ae078b61df9/osqp/src/osqp_sources
   used as include directory in directory /tmp/th798/6801141/RtmpD98bu0/R.INSTALL257ae078b61df9/osqp/src/osqp_sources/lin_sys
   used as include directory in directory /tmp/th798/6801141/RtmpD98bu0/R.INSTALL257ae078b61df9/osqp/src/osqp_sources/lin_sys
   used as include directory in directory /tmp/th798/6801141/RtmpD98bu0/R.INSTALL257ae078b61df9/osqp/src/osqp_sources/lin_sys
   used as include directory in directory /tmp/th798/6801141/RtmpD98bu0/R.INSTALL257ae078b61df9/osqp/src/osqp_sources/lin_sys
   used as include directory in directory /tmp/th798/6801141/RtmpD98bu0/R.INSTALL257ae078b61df9/osqp/src/osqp_sources/lin_sys
   used as include directory in directory /tmp/th798/6801141/RtmpD98bu0/R.INSTALL257ae078b61df9/osqp/src/osqp_sources/lin_sys
   used as include directory in directory /tmp/th798/6801141/RtmpD98bu0/R.INSTALL257ae078b61df9/osqp/src/osqp_sources/lin_sys/direct
   used as include directory in directory /tmp/th798/6801141/RtmpD98bu0/R.INSTALL257ae078b61df9/osqp/src/osqp_sources/lin_sys/direct
   used as include directory in directory /tmp/th798/6801141/RtmpD98bu0/R.INSTALL257ae078b61df9/osqp/src/osqp_sources/lin_sys/direct
   used as include directory in directory /tmp/th798/6801141/RtmpD98bu0/R.INSTALL257ae078b61df9/osqp/src/osqp_sources/lin_sys/direct
   used as include directory in directory /tmp/th798/6801141/RtmpD98bu0/R.INSTALL257ae078b61df9/osqp/src/osqp_sources/lin_sys/direct
   used as include directory in directory /tmp/th798/6801141/RtmpD98bu0/R.INSTALL257ae078b61df9/osqp/src/osqp_sources/lin_sys/direct
   used as include directory in directory /tmp/th798/6801141/RtmpD98bu0/R.INSTALL257ae078b61df9/osqp/src/osqp_sources/lin_sys/direct
   used as include directory in directory /tmp/th798/6801141/RtmpD98bu0/R.INSTALL257ae078b61df9/osqp/src/osqp_sources/lin_sys/direct/qdldl
   used as include directory in directory /tmp/th798/6801141/RtmpD98bu0/R.INSTALL257ae078b61df9/osqp/src/osqp_sources/lin_sys/direct/qdldl
   used as include directory in directory /tmp/th798/6801141/RtmpD98bu0/R.INSTALL257ae078b61df9/osqp/src/osqp_sources/lin_sys/direct/qdldl
   used as include directory in directory /tmp/th798/6801141/RtmpD98bu0/R.INSTALL257ae078b61df9/osqp/src/osqp_sources/lin_sys/direct/qdldl
   used as include directory in directory /tmp/th798/6801141/RtmpD98bu0/R.INSTALL257ae078b61df9/osqp/src/osqp_sources/lin_sys/direct/qdldl
   used as include directory in directory /tmp/th798/6801141/RtmpD98bu0/R.INSTALL257ae078b61df9/osqp/src/osqp_sources/lin_sys/direct/qdldl
   used as include directory in directory /tmp/th798/6801141/RtmpD98bu0/R.INSTALL257ae078b61df9/osqp/src/osqp_sources/lin_sys/direct/qdldl
   used as include directory in directory /tmp/th798/6801141/RtmpD98bu0/R.INSTALL257ae078b61df9/osqp/src/osqp_sources/lin_sys/direct/qdldl/qdldl_sources
   used as include directory in directory /tmp/th798/6801141/RtmpD98bu0/R.INSTALL257ae078b61df9/osqp/src/osqp_sources/lin_sys/direct/qdldl/qdldl_sources
   used as include directory in directory /tmp/th798/6801141/RtmpD98bu0/R.INSTALL257ae078b61df9/osqp/src/osqp_sources/lin_sys/direct/qdldl/qdldl_sources
   used as include directory in directory /tmp/th798/6801141/RtmpD98bu0/R.INSTALL257ae078b61df9/osqp/src/osqp_sources/lin_sys/direct/qdldl/qdldl_sources
   used as include directory in directory /tmp/th798/6801141/RtmpD98bu0/R.INSTALL257ae078b61df9/osqp/src/osqp_sources/lin_sys/direct/qdldl/qdldl_sources
   used as include directory in directory /tmp/th798/6801141/RtmpD98bu0/R.INSTALL257ae078b61df9/osqp/src/osqp_sources/lin_sys/direct/qdldl/qdldl_sources
   used as include directory in directory /tmp/th798/6801141/RtmpD98bu0/R.INSTALL257ae078b61df9/osqp/src/osqp_sources/lin_sys/direct/qdldl/qdldl_sources
   used as include directory in directory /tmp/th798/6801141/RtmpD98bu0/R.INSTALL257ae078b61df9/osqp/src/osqp_sources/lin_sys/direct/qdldl/qdldl_sources
   used as include directory in directory /tmp/th798/6801141/RtmpD98bu0/R.INSTALL257ae078b61df9/osqp/src/osqp_sources/lin_sys/direct/qdldl/qdldl_sources
   used as include directory in directory /tmp/th798/6801141/RtmpD98bu0/R.INSTALL257ae078b61df9/osqp/src/osqp_sources/lin_sys/direct/qdldl/qdldl_sources
   used as include directory in directory /tmp/th798/6801141/RtmpD98bu0/R.INSTALL257ae078b61df9/osqp/src/osqp_sources/lin_sys/direct/qdldl/qdldl_sources
   used as include directory in directory /tmp/th798/6801141/RtmpD98bu0/R.INSTALL257ae078b61df9/osqp/src/osqp_sources/lin_sys/direct/pardiso
   used as include directory in directory /tmp/th798/6801141/RtmpD98bu0/R.INSTALL257ae078b61df9/osqp/src/osqp_sources/lin_sys/direct/pardiso
   used as include directory in directory /tmp/th798/6801141/RtmpD98bu0/R.INSTALL257ae078b61df9/osqp/src/osqp_sources/lin_sys/direct/pardiso
   used as include directory in directory /tmp/th798/6801141/RtmpD98bu0/R.INSTALL257ae078b61df9/osqp/src/osqp_sources/lin_sys/direct/pardiso
   used as include directory in directory /tmp/th798/6801141/RtmpD98bu0/R.INSTALL257ae078b61df9/osqp/src/osqp_sources/lin_sys/direct/pardiso
   used as include directory in directory /tmp/th798/6801141/RtmpD98bu0/R.INSTALL257ae078b61df9/osqp/src/osqp_sources/lin_sys/direct/pardiso

CMake Error in CMakeLists.txt:
  Found relative path while evaluating include directories of "osqpstatic":

    "R_INCLUDE_DIRS-NOTFOUND"



CMake Error in lin_sys/direct/CMakeLists.txt:
  Found relative path while evaluating include directories of
  "linsys_pardiso":

    "R_INCLUDE_DIRS-NOTFOUND"



CMake Error in lin_sys/direct/qdldl/CMakeLists.txt:
  Found relative path while evaluating include directories of "linsys_qdldl":

    "R_INCLUDE_DIRS-NOTFOUND"



CMake Error in lin_sys/direct/qdldl/qdldl_sources/CMakeLists.txt:
  Found relative path while evaluating include directories of "qdldlobject":

    "R_INCLUDE_DIRS-NOTFOUND"



CMake Error in lin_sys/direct/qdldl/qdldl_sources/CMakeLists.txt:
  Found relative path while evaluating include directories of "qdldlstatic":

    "R_INCLUDE_DIRS-NOTFOUND"



CMake Error in lin_sys/direct/qdldl/qdldl_sources/CMakeLists.txt:
  Found relative path while evaluating include directories of "qdldl":

    "R_INCLUDE_DIRS-NOTFOUND"



CMake Error in lin_sys/direct/qdldl/qdldl_sources/CMakeLists.txt:
  Found relative path while evaluating include directories of
  "qdldl_example":

    "R_INCLUDE_DIRS-NOTFOUND"



-- Generating done
CMake Generate step failed.  Build files cannot be regenerated correctly.
ERROR: configuration failed for package 'osqp'
@tdhock
Copy link
Owner Author

tdhock commented Dec 8, 2023

installing osqp using ~/bin/R works,

* installing *source* package ‘osqp’ ...
** package ‘osqp’ successfully unpacked and MD5 sums checked
** using staged installation
++ : /home/th798/lib64/R
++ test -z /home/th798/lib64/R
+++ /home/th798/lib64/R/bin/R CMD config CC
++ CC=gcc
+++ /home/th798/lib64/R/bin/R CMD config CFLAGS
++ CFLAGS='-g -O2'
+++ /home/th798/lib64/R/bin/R CMD config CPPFLAGS
++ CPPFLAGS='-I/home/th798/.conda/envs/emacs1/include -I/home/th798/include'
+++ /home/th798/lib64/R/bin/R CMD config CXX
++ CXX='g++ -std=gnu++17'
+++ /home/th798/lib64/R/bin/R CMD config CXXFLAGS
++ CXXFLAGS='-g -O2'
+++ /home/th798/lib64/R/bin/R CMD config LDFLAGS
++ LDFLAGS='-L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64'
+++ command -v cmake
++ '[' -x /home/th798/.conda/envs/emacs1/bin/cmake ']'
++ echo 'Making fixes to osqp_sources for CRAN'
Making fixes to osqp_sources for CRAN
++ cd src
++ /home/th798/lib64/R/bin/Rscript ../inst/58f00bd_fixes/make_fixes.R
[1] TRUE
++ echo '-- Trying to build libosqp.a via cmake ...'
-- Trying to build libosqp.a via cmake ...
++ cd src/osqp_sources
++ mkdir -p build
++ cd build
++ cmake -DR_HOME=/home/th798/lib64/R -DCMAKE_BUILD_TYPE=Release -DBUILD_SHARED_LIBS:bool=OFF -DCMAKE_POSITION_INDEPENDENT_CODE:bool=ON -DR_LANG=TRUE -DCMAKE_INSTALL_PREFIX:PATH=../../ ..
-- The C compiler identification is GNU 8.5.0
-- The CXX compiler identification is GNU 8.5.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/gcc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/g++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- We are on a Linux system
-- Embedded is OFF
-- Printing is ON
-- Profiling is ON
-- User interrupt is ON
-- Floats are OFF
-- Long integers (64bit) are ON
-- Code coverage is OFF
-- MKL Pardiso: ON
-- We are building the R interface
-- R exec is: /home/th798/bin/R
-- R root dir is: /home/th798/lib64/R
-- R includes are in: /home/th798/lib64/R/include
-- Floats are OFF
-- Long integers (64bit) are ON
-- Configuring done
-- Generating done
-- Build files have been written to: /tmp/th798/6813878/RtmpmfVAkb/R.INSTALL1e33c71cb5d3f3/osqp/src/osqp_sources/build
++ cmake --build . --target install
[  2%] Building C object lin_sys/direct/qdldl/qdldl_sources/CMakeFiles/qdldlobject.dir/src/qdldl.c.o
[  2%] Built target qdldlobject
[  5%] Building C object lin_sys/direct/CMakeFiles/linsys_pardiso.dir/pardiso/pardiso_interface.c.o
[  8%] Building C object lin_sys/direct/CMakeFiles/linsys_pardiso.dir/pardiso/pardiso_loader.c.o
[  8%] Built target linsys_pardiso
[ 11%] Building C object lin_sys/direct/qdldl/CMakeFiles/linsys_qdldl.dir/amd/src/amd_1.c.o
[ 13%] Building C object lin_sys/direct/qdldl/CMakeFiles/linsys_qdldl.dir/amd/src/amd_2.c.o
[ 16%] Building C object lin_sys/direct/qdldl/CMakeFiles/linsys_qdldl.dir/amd/src/amd_aat.c.o
[ 19%] Building C object lin_sys/direct/qdldl/CMakeFiles/linsys_qdldl.dir/amd/src/amd_control.c.o
[ 22%] Building C object lin_sys/direct/qdldl/CMakeFiles/linsys_qdldl.dir/amd/src/amd_defaults.c.o
[ 25%] Building C object lin_sys/direct/qdldl/CMakeFiles/linsys_qdldl.dir/amd/src/amd_info.c.o
[ 27%] Building C object lin_sys/direct/qdldl/CMakeFiles/linsys_qdldl.dir/amd/src/amd_order.c.o
[ 30%] Building C object lin_sys/direct/qdldl/CMakeFiles/linsys_qdldl.dir/amd/src/amd_post_tree.c.o
[ 33%] Building C object lin_sys/direct/qdldl/CMakeFiles/linsys_qdldl.dir/amd/src/amd_postorder.c.o
[ 36%] Building C object lin_sys/direct/qdldl/CMakeFiles/linsys_qdldl.dir/amd/src/amd_preprocess.c.o
[ 38%] Building C object lin_sys/direct/qdldl/CMakeFiles/linsys_qdldl.dir/amd/src/amd_valid.c.o
[ 41%] Building C object lin_sys/direct/qdldl/CMakeFiles/linsys_qdldl.dir/amd/src/SuiteSparse_config.c.o
[ 44%] Building C object lin_sys/direct/qdldl/CMakeFiles/linsys_qdldl.dir/qdldl_interface.c.o
[ 44%] Built target linsys_qdldl
[ 47%] Building C object CMakeFiles/osqpstatic.dir/src/auxil.c.o
[ 50%] Building C object CMakeFiles/osqpstatic.dir/src/error.c.o
[ 52%] Building C object CMakeFiles/osqpstatic.dir/src/lin_alg.c.o
[ 55%] Building C object CMakeFiles/osqpstatic.dir/src/osqp.c.o
[ 58%] Building C object CMakeFiles/osqpstatic.dir/src/proj.c.o
[ 61%] Building C object CMakeFiles/osqpstatic.dir/src/scaling.c.o
[ 63%] Building C object CMakeFiles/osqpstatic.dir/src/util.c.o
[ 66%] Building C object CMakeFiles/osqpstatic.dir/src/kkt.c.o
[ 69%] Building C object CMakeFiles/osqpstatic.dir/src/cs.c.o
[ 72%] Building C object CMakeFiles/osqpstatic.dir/src/polish.c.o
[ 75%] Building C object CMakeFiles/osqpstatic.dir/src/lin_sys.c.o
[ 77%] Building C object CMakeFiles/osqpstatic.dir/src/ctrlc.c.o
[ 80%] Building C object CMakeFiles/osqpstatic.dir/lin_sys/lib_handler.c.o
[ 83%] Linking C static library out/libosqp.a
[ 83%] Built target osqpstatic
[ 86%] Building C object lin_sys/direct/qdldl/qdldl_sources/CMakeFiles/qdldlstatic.dir/src/qdldl.c.o
[ 88%] Linking C static library out/libqdldl.a
[ 88%] Built target qdldlstatic
[ 91%] Building C object lin_sys/direct/qdldl/qdldl_sources/CMakeFiles/qdldl.dir/src/qdldl.c.o
[ 94%] Linking C shared library out/libqdldl.so
[ 94%] Built target qdldl
[ 97%] Building C object lin_sys/direct/qdldl/qdldl_sources/CMakeFiles/qdldl_example.dir/examples/example.c.o
[100%] Linking C executable out/qdldl_example
[100%] Built target qdldl_example
Install the project...
-- Install configuration: "Release"
-- Installing: /tmp/th798/6813878/RtmpmfVAkb/R.INSTALL1e33c71cb5d3f3/osqp/src/osqp_sources/build/../../lib64/libosqp.a
-- Installing: /tmp/th798/6813878/RtmpmfVAkb/R.INSTALL1e33c71cb5d3f3/osqp/src/osqp_sources/build/../../include/osqp/version.h
-- Installing: /tmp/th798/6813878/RtmpmfVAkb/R.INSTALL1e33c71cb5d3f3/osqp/src/osqp_sources/build/../../include/osqp/auxil.h
-- Installing: /tmp/th798/6813878/RtmpmfVAkb/R.INSTALL1e33c71cb5d3f3/osqp/src/osqp_sources/build/../../include/osqp/constants.h
-- Installing: /tmp/th798/6813878/RtmpmfVAkb/R.INSTALL1e33c71cb5d3f3/osqp/src/osqp_sources/build/../../include/osqp/error.h
-- Installing: /tmp/th798/6813878/RtmpmfVAkb/R.INSTALL1e33c71cb5d3f3/osqp/src/osqp_sources/build/../../include/osqp/glob_opts.h
-- Installing: /tmp/th798/6813878/RtmpmfVAkb/R.INSTALL1e33c71cb5d3f3/osqp/src/osqp_sources/build/../../include/osqp/lin_alg.h
-- Installing: /tmp/th798/6813878/RtmpmfVAkb/R.INSTALL1e33c71cb5d3f3/osqp/src/osqp_sources/build/../../include/osqp/osqp.h
-- Installing: /tmp/th798/6813878/RtmpmfVAkb/R.INSTALL1e33c71cb5d3f3/osqp/src/osqp_sources/build/../../include/osqp/osqp_configure.h
-- Installing: /tmp/th798/6813878/RtmpmfVAkb/R.INSTALL1e33c71cb5d3f3/osqp/src/osqp_sources/build/../../include/osqp/osqp_proj.h
-- Installing: /tmp/th798/6813878/RtmpmfVAkb/R.INSTALL1e33c71cb5d3f3/osqp/src/osqp_sources/build/../../include/osqp/scaling.h
-- Installing: /tmp/th798/6813878/RtmpmfVAkb/R.INSTALL1e33c71cb5d3f3/osqp/src/osqp_sources/build/../../include/osqp/types.h
-- Installing: /tmp/th798/6813878/RtmpmfVAkb/R.INSTALL1e33c71cb5d3f3/osqp/src/osqp_sources/build/../../include/osqp/util.h
-- Installing: /tmp/th798/6813878/RtmpmfVAkb/R.INSTALL1e33c71cb5d3f3/osqp/src/osqp_sources/build/../../include/osqp/cs.h
-- Installing: /tmp/th798/6813878/RtmpmfVAkb/R.INSTALL1e33c71cb5d3f3/osqp/src/osqp_sources/build/../../include/osqp/polish.h
-- Installing: /tmp/th798/6813878/RtmpmfVAkb/R.INSTALL1e33c71cb5d3f3/osqp/src/osqp_sources/build/../../include/osqp/lin_sys.h
-- Installing: /tmp/th798/6813878/RtmpmfVAkb/R.INSTALL1e33c71cb5d3f3/osqp/src/osqp_sources/build/../../include/osqp/ctrlc.h
-- Installing: /tmp/th798/6813878/RtmpmfVAkb/R.INSTALL1e33c71cb5d3f3/osqp/src/osqp_sources/build/../../lib64/cmake/osqp/osqp-targets.cmake
-- Installing: /tmp/th798/6813878/RtmpmfVAkb/R.INSTALL1e33c71cb5d3f3/osqp/src/osqp_sources/build/../../lib64/cmake/osqp/osqp-targets-release.cmake
-- Installing: /tmp/th798/6813878/RtmpmfVAkb/R.INSTALL1e33c71cb5d3f3/osqp/src/osqp_sources/build/../../lib64/cmake/osqp/osqp-config.cmake
-- Installing: /tmp/th798/6813878/RtmpmfVAkb/R.INSTALL1e33c71cb5d3f3/osqp/src/osqp_sources/build/../../lib64/libqdldl.a
-- Installing: /tmp/th798/6813878/RtmpmfVAkb/R.INSTALL1e33c71cb5d3f3/osqp/src/osqp_sources/build/../../include/qdldl/qdldl.h
-- Installing: /tmp/th798/6813878/RtmpmfVAkb/R.INSTALL1e33c71cb5d3f3/osqp/src/osqp_sources/build/../../include/qdldl/qdldl_types.h
-- Installing: /tmp/th798/6813878/RtmpmfVAkb/R.INSTALL1e33c71cb5d3f3/osqp/src/osqp_sources/build/../../lib64/libqdldl.so
-- Installing: /tmp/th798/6813878/RtmpmfVAkb/R.INSTALL1e33c71cb5d3f3/osqp/src/osqp_sources/build/../../lib/cmake/qdldl/qdldl-targets.cmake
-- Installing: /tmp/th798/6813878/RtmpmfVAkb/R.INSTALL1e33c71cb5d3f3/osqp/src/osqp_sources/build/../../lib/cmake/qdldl/qdldl-targets-release.cmake
-- Installing: /tmp/th798/6813878/RtmpmfVAkb/R.INSTALL1e33c71cb5d3f3/osqp/src/osqp_sources/build/../../lib/cmake/qdldl/qdldl-config.cmake
++ cd ..
++ rm -rf build/
++ cd ../../
++ echo '-- Built libosqp.a'
-- Built libosqp.a
** libs
using C++ compiler: ‘g++ (GCC) 8.5.0 20210514 (Red Hat 8.5.0-18)’
using C++17
# The OSQP static library should already exist and
# be in the correct place if we are building via cmake.
# If we find ourselves without cmake installed (e.g. because the
# package is being built in the CRAN servers), then we have
# a go at building the static library here.
echo "Making fixes to osqp_sources for CRAN"
Making fixes to osqp_sources for CRAN
/home/th798/lib64/R/bin/Rscript ../inst/58f00bd_fixes/make_fixes.R
[1] FALSE
Warning message:
In file.rename(from = "osqp_sources/include/proj.h", to = "osqp_sources/include/osqp_proj.h") :
  cannot rename file 'osqp_sources/include/proj.h' to 'osqp_sources/include/osqp_proj.h', reason 'No such file or directory'
echo "No cmake?  I will try via osqp/Makefile"
No cmake?  I will try via osqp/Makefile
cd osqp; \
	make all CC="gcc" \
	OSQP_FLAGS="-DR_LANG=TRUE" \
	R_INCLUDE_DIR="/home/th798/lib64/R/include" CFLAGS="-g -O2 " \
	CPICFLAGS="-fpic" ARFLAGS="rv" \
	AR="ar" RANLIB="ranlib" ; \
	make clean
make[1]: Entering directory '/tmp/th798/6813878/RtmpmfVAkb/R.INSTALL1e33c71cb5d3f3/osqp/src/osqp'
gcc -c ../osqp_sources//src/auxil.c -o ../osqp_sources//src/auxil.o -I../osqp_sources//include -I../osqp_sources//lin_sys -I../osqp_sources//lin_sys/direct/pardiso -I../osqp_sources//lin_sys/direct/qdldl -I../osqp_sources//lin_sys/direct/qdldl/amd/include -I../osqp_sources//lin_sys/direct/qdldl/qdldl_sources/include -I/home/th798/lib64/R/include -fpic -DR_LANG=TRUE -g -O2 
gcc -c ../osqp_sources//src/cs.c -o ../osqp_sources//src/cs.o -I../osqp_sources//include -I../osqp_sources//lin_sys -I../osqp_sources//lin_sys/direct/pardiso -I../osqp_sources//lin_sys/direct/qdldl -I../osqp_sources//lin_sys/direct/qdldl/amd/include -I../osqp_sources//lin_sys/direct/qdldl/qdldl_sources/include -I/home/th798/lib64/R/include -fpic -DR_LANG=TRUE -g -O2 
gcc -c ../osqp_sources//src/ctrlc.c -o ../osqp_sources//src/ctrlc.o -I../osqp_sources//include -I../osqp_sources//lin_sys -I../osqp_sources//lin_sys/direct/pardiso -I../osqp_sources//lin_sys/direct/qdldl -I../osqp_sources//lin_sys/direct/qdldl/amd/include -I../osqp_sources//lin_sys/direct/qdldl/qdldl_sources/include -I/home/th798/lib64/R/include -fpic -DR_LANG=TRUE -g -O2 
gcc -c ../osqp_sources//src/error.c -o ../osqp_sources//src/error.o -I../osqp_sources//include -I../osqp_sources//lin_sys -I../osqp_sources//lin_sys/direct/pardiso -I../osqp_sources//lin_sys/direct/qdldl -I../osqp_sources//lin_sys/direct/qdldl/amd/include -I../osqp_sources//lin_sys/direct/qdldl/qdldl_sources/include -I/home/th798/lib64/R/include -fpic -DR_LANG=TRUE -g -O2 
gcc -c ../osqp_sources//src/kkt.c -o ../osqp_sources//src/kkt.o -I../osqp_sources//include -I../osqp_sources//lin_sys -I../osqp_sources//lin_sys/direct/pardiso -I../osqp_sources//lin_sys/direct/qdldl -I../osqp_sources//lin_sys/direct/qdldl/amd/include -I../osqp_sources//lin_sys/direct/qdldl/qdldl_sources/include -I/home/th798/lib64/R/include -fpic -DR_LANG=TRUE -g -O2 
gcc -c ../osqp_sources//src/lin_alg.c -o ../osqp_sources//src/lin_alg.o -I../osqp_sources//include -I../osqp_sources//lin_sys -I../osqp_sources//lin_sys/direct/pardiso -I../osqp_sources//lin_sys/direct/qdldl -I../osqp_sources//lin_sys/direct/qdldl/amd/include -I../osqp_sources//lin_sys/direct/qdldl/qdldl_sources/include -I/home/th798/lib64/R/include -fpic -DR_LANG=TRUE -g -O2 
gcc -c ../osqp_sources//src/lin_sys.c -o ../osqp_sources//src/lin_sys.o -I../osqp_sources//include -I../osqp_sources//lin_sys -I../osqp_sources//lin_sys/direct/pardiso -I../osqp_sources//lin_sys/direct/qdldl -I../osqp_sources//lin_sys/direct/qdldl/amd/include -I../osqp_sources//lin_sys/direct/qdldl/qdldl_sources/include -I/home/th798/lib64/R/include -fpic -DR_LANG=TRUE -g -O2 
gcc -c ../osqp_sources//src/osqp.c -o ../osqp_sources//src/osqp.o -I../osqp_sources//include -I../osqp_sources//lin_sys -I../osqp_sources//lin_sys/direct/pardiso -I../osqp_sources//lin_sys/direct/qdldl -I../osqp_sources//lin_sys/direct/qdldl/amd/include -I../osqp_sources//lin_sys/direct/qdldl/qdldl_sources/include -I/home/th798/lib64/R/include -fpic -DR_LANG=TRUE -g -O2 
gcc -c ../osqp_sources//src/polish.c -o ../osqp_sources//src/polish.o -I../osqp_sources//include -I../osqp_sources//lin_sys -I../osqp_sources//lin_sys/direct/pardiso -I../osqp_sources//lin_sys/direct/qdldl -I../osqp_sources//lin_sys/direct/qdldl/amd/include -I../osqp_sources//lin_sys/direct/qdldl/qdldl_sources/include -I/home/th798/lib64/R/include -fpic -DR_LANG=TRUE -g -O2 
gcc -c ../osqp_sources//src/proj.c -o ../osqp_sources//src/proj.o -I../osqp_sources//include -I../osqp_sources//lin_sys -I../osqp_sources//lin_sys/direct/pardiso -I../osqp_sources//lin_sys/direct/qdldl -I../osqp_sources//lin_sys/direct/qdldl/amd/include -I../osqp_sources//lin_sys/direct/qdldl/qdldl_sources/include -I/home/th798/lib64/R/include -fpic -DR_LANG=TRUE -g -O2 
gcc -c ../osqp_sources//src/scaling.c -o ../osqp_sources//src/scaling.o -I../osqp_sources//include -I../osqp_sources//lin_sys -I../osqp_sources//lin_sys/direct/pardiso -I../osqp_sources//lin_sys/direct/qdldl -I../osqp_sources//lin_sys/direct/qdldl/amd/include -I../osqp_sources//lin_sys/direct/qdldl/qdldl_sources/include -I/home/th798/lib64/R/include -fpic -DR_LANG=TRUE -g -O2 
gcc -c ../osqp_sources//src/util.c -o ../osqp_sources//src/util.o -I../osqp_sources//include -I../osqp_sources//lin_sys -I../osqp_sources//lin_sys/direct/pardiso -I../osqp_sources//lin_sys/direct/qdldl -I../osqp_sources//lin_sys/direct/qdldl/amd/include -I../osqp_sources//lin_sys/direct/qdldl/qdldl_sources/include -I/home/th798/lib64/R/include -fpic -DR_LANG=TRUE -g -O2 
gcc -c ../osqp_sources//lin_sys/lib_handler.c -o ../osqp_sources//lin_sys/lib_handler.o -I../osqp_sources//include -I../osqp_sources//lin_sys -I../osqp_sources//lin_sys/direct/pardiso -I../osqp_sources//lin_sys/direct/qdldl -I../osqp_sources//lin_sys/direct/qdldl/amd/include -I../osqp_sources//lin_sys/direct/qdldl/qdldl_sources/include -I/home/th798/lib64/R/include -fpic -DR_LANG=TRUE -g -O2 
gcc -c ../osqp_sources//lin_sys/direct/pardiso/pardiso_interface.c -o ../osqp_sources//lin_sys/direct/pardiso/pardiso_interface.o -I../osqp_sources//include -I../osqp_sources//lin_sys -I../osqp_sources//lin_sys/direct/pardiso -I../osqp_sources//lin_sys/direct/qdldl -I../osqp_sources//lin_sys/direct/qdldl/amd/include -I../osqp_sources//lin_sys/direct/qdldl/qdldl_sources/include -I/home/th798/lib64/R/include -fpic -DR_LANG=TRUE -g -O2 
gcc -c ../osqp_sources//lin_sys/direct/pardiso/pardiso_loader.c -o ../osqp_sources//lin_sys/direct/pardiso/pardiso_loader.o -I../osqp_sources//include -I../osqp_sources//lin_sys -I../osqp_sources//lin_sys/direct/pardiso -I../osqp_sources//lin_sys/direct/qdldl -I../osqp_sources//lin_sys/direct/qdldl/amd/include -I../osqp_sources//lin_sys/direct/qdldl/qdldl_sources/include -I/home/th798/lib64/R/include -fpic -DR_LANG=TRUE -g -O2 
gcc -c ../osqp_sources//lin_sys/direct/qdldl/amd/src/SuiteSparse_config.c -o ../osqp_sources//lin_sys/direct/qdldl/amd/src/SuiteSparse_config.o -I../osqp_sources//include -I../osqp_sources//lin_sys -I../osqp_sources//lin_sys/direct/pardiso -I../osqp_sources//lin_sys/direct/qdldl -I../osqp_sources//lin_sys/direct/qdldl/amd/include -I../osqp_sources//lin_sys/direct/qdldl/qdldl_sources/include -I/home/th798/lib64/R/include -fpic -DR_LANG=TRUE -g -O2 
gcc -c ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_1.c -o ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_1.o -I../osqp_sources//include -I../osqp_sources//lin_sys -I../osqp_sources//lin_sys/direct/pardiso -I../osqp_sources//lin_sys/direct/qdldl -I../osqp_sources//lin_sys/direct/qdldl/amd/include -I../osqp_sources//lin_sys/direct/qdldl/qdldl_sources/include -I/home/th798/lib64/R/include -fpic -DR_LANG=TRUE -g -O2 
gcc -c ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_2.c -o ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_2.o -I../osqp_sources//include -I../osqp_sources//lin_sys -I../osqp_sources//lin_sys/direct/pardiso -I../osqp_sources//lin_sys/direct/qdldl -I../osqp_sources//lin_sys/direct/qdldl/amd/include -I../osqp_sources//lin_sys/direct/qdldl/qdldl_sources/include -I/home/th798/lib64/R/include -fpic -DR_LANG=TRUE -g -O2 
gcc -c ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_aat.c -o ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_aat.o -I../osqp_sources//include -I../osqp_sources//lin_sys -I../osqp_sources//lin_sys/direct/pardiso -I../osqp_sources//lin_sys/direct/qdldl -I../osqp_sources//lin_sys/direct/qdldl/amd/include -I../osqp_sources//lin_sys/direct/qdldl/qdldl_sources/include -I/home/th798/lib64/R/include -fpic -DR_LANG=TRUE -g -O2 
gcc -c ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_control.c -o ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_control.o -I../osqp_sources//include -I../osqp_sources//lin_sys -I../osqp_sources//lin_sys/direct/pardiso -I../osqp_sources//lin_sys/direct/qdldl -I../osqp_sources//lin_sys/direct/qdldl/amd/include -I../osqp_sources//lin_sys/direct/qdldl/qdldl_sources/include -I/home/th798/lib64/R/include -fpic -DR_LANG=TRUE -g -O2 
gcc -c ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_defaults.c -o ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_defaults.o -I../osqp_sources//include -I../osqp_sources//lin_sys -I../osqp_sources//lin_sys/direct/pardiso -I../osqp_sources//lin_sys/direct/qdldl -I../osqp_sources//lin_sys/direct/qdldl/amd/include -I../osqp_sources//lin_sys/direct/qdldl/qdldl_sources/include -I/home/th798/lib64/R/include -fpic -DR_LANG=TRUE -g -O2 
gcc -c ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_info.c -o ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_info.o -I../osqp_sources//include -I../osqp_sources//lin_sys -I../osqp_sources//lin_sys/direct/pardiso -I../osqp_sources//lin_sys/direct/qdldl -I../osqp_sources//lin_sys/direct/qdldl/amd/include -I../osqp_sources//lin_sys/direct/qdldl/qdldl_sources/include -I/home/th798/lib64/R/include -fpic -DR_LANG=TRUE -g -O2 
gcc -c ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_order.c -o ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_order.o -I../osqp_sources//include -I../osqp_sources//lin_sys -I../osqp_sources//lin_sys/direct/pardiso -I../osqp_sources//lin_sys/direct/qdldl -I../osqp_sources//lin_sys/direct/qdldl/amd/include -I../osqp_sources//lin_sys/direct/qdldl/qdldl_sources/include -I/home/th798/lib64/R/include -fpic -DR_LANG=TRUE -g -O2 
gcc -c ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_post_tree.c -o ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_post_tree.o -I../osqp_sources//include -I../osqp_sources//lin_sys -I../osqp_sources//lin_sys/direct/pardiso -I../osqp_sources//lin_sys/direct/qdldl -I../osqp_sources//lin_sys/direct/qdldl/amd/include -I../osqp_sources//lin_sys/direct/qdldl/qdldl_sources/include -I/home/th798/lib64/R/include -fpic -DR_LANG=TRUE -g -O2 
gcc -c ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_postorder.c -o ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_postorder.o -I../osqp_sources//include -I../osqp_sources//lin_sys -I../osqp_sources//lin_sys/direct/pardiso -I../osqp_sources//lin_sys/direct/qdldl -I../osqp_sources//lin_sys/direct/qdldl/amd/include -I../osqp_sources//lin_sys/direct/qdldl/qdldl_sources/include -I/home/th798/lib64/R/include -fpic -DR_LANG=TRUE -g -O2 
gcc -c ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_preprocess.c -o ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_preprocess.o -I../osqp_sources//include -I../osqp_sources//lin_sys -I../osqp_sources//lin_sys/direct/pardiso -I../osqp_sources//lin_sys/direct/qdldl -I../osqp_sources//lin_sys/direct/qdldl/amd/include -I../osqp_sources//lin_sys/direct/qdldl/qdldl_sources/include -I/home/th798/lib64/R/include -fpic -DR_LANG=TRUE -g -O2 
gcc -c ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_valid.c -o ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_valid.o -I../osqp_sources//include -I../osqp_sources//lin_sys -I../osqp_sources//lin_sys/direct/pardiso -I../osqp_sources//lin_sys/direct/qdldl -I../osqp_sources//lin_sys/direct/qdldl/amd/include -I../osqp_sources//lin_sys/direct/qdldl/qdldl_sources/include -I/home/th798/lib64/R/include -fpic -DR_LANG=TRUE -g -O2 
gcc -c ../osqp_sources//lin_sys/direct/qdldl/qdldl_interface.c -o ../osqp_sources//lin_sys/direct/qdldl/qdldl_interface.o -I../osqp_sources//include -I../osqp_sources//lin_sys -I../osqp_sources//lin_sys/direct/pardiso -I../osqp_sources//lin_sys/direct/qdldl -I../osqp_sources//lin_sys/direct/qdldl/amd/include -I../osqp_sources//lin_sys/direct/qdldl/qdldl_sources/include -I/home/th798/lib64/R/include -fpic -DR_LANG=TRUE -g -O2 
gcc -c ../osqp_sources//lin_sys/direct/qdldl/qdldl_sources/src/qdldl.c -o ../osqp_sources//lin_sys/direct/qdldl/qdldl_sources/src/qdldl.o -I../osqp_sources//include -I../osqp_sources//lin_sys -I../osqp_sources//lin_sys/direct/pardiso -I../osqp_sources//lin_sys/direct/qdldl -I../osqp_sources//lin_sys/direct/qdldl/amd/include -I../osqp_sources//lin_sys/direct/qdldl/qdldl_sources/include -I/home/th798/lib64/R/include -fpic -DR_LANG=TRUE -g -O2 
mkdir -p ../lib/
ar rv ../lib//libosqp.a ../osqp_sources//src/auxil.o ../osqp_sources//src/cs.o ../osqp_sources//src/ctrlc.o ../osqp_sources//src/error.o ../osqp_sources//src/kkt.o ../osqp_sources//src/lin_alg.o ../osqp_sources//src/lin_sys.o ../osqp_sources//src/osqp.o ../osqp_sources//src/polish.o ../osqp_sources//src/proj.o ../osqp_sources//src/scaling.o ../osqp_sources//src/util.o ../osqp_sources//lin_sys/lib_handler.o ../osqp_sources//lin_sys/direct/pardiso/pardiso_interface.o ../osqp_sources//lin_sys/direct/pardiso/pardiso_loader.o ../osqp_sources//lin_sys/direct/qdldl/amd/src/SuiteSparse_config.o ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_1.o ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_2.o ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_aat.o ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_control.o ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_defaults.o ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_info.o ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_order.o ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_post_tree.o ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_postorder.o ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_preprocess.o ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_valid.o ../osqp_sources//lin_sys/direct/qdldl/qdldl_interface.o ../osqp_sources//lin_sys/direct/qdldl/qdldl_sources/src/qdldl.o
ar: creating ../lib//libosqp.a
a - ../osqp_sources//src/auxil.o
a - ../osqp_sources//src/cs.o
a - ../osqp_sources//src/ctrlc.o
a - ../osqp_sources//src/error.o
a - ../osqp_sources//src/kkt.o
a - ../osqp_sources//src/lin_alg.o
a - ../osqp_sources//src/lin_sys.o
a - ../osqp_sources//src/osqp.o
a - ../osqp_sources//src/polish.o
a - ../osqp_sources//src/proj.o
a - ../osqp_sources//src/scaling.o
a - ../osqp_sources//src/util.o
a - ../osqp_sources//lin_sys/lib_handler.o
a - ../osqp_sources//lin_sys/direct/pardiso/pardiso_interface.o
a - ../osqp_sources//lin_sys/direct/pardiso/pardiso_loader.o
a - ../osqp_sources//lin_sys/direct/qdldl/amd/src/SuiteSparse_config.o
a - ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_1.o
a - ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_2.o
a - ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_aat.o
a - ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_control.o
a - ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_defaults.o
a - ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_info.o
a - ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_order.o
a - ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_post_tree.o
a - ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_postorder.o
a - ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_preprocess.o
a - ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_valid.o
a - ../osqp_sources//lin_sys/direct/qdldl/qdldl_interface.o
a - ../osqp_sources//lin_sys/direct/qdldl/qdldl_sources/src/qdldl.o
ranlib ../lib//libosqp.a
mkdir -p ../include/osqp/
cp ../osqp_sources//include/*.h ../include/osqp/
/usr/bin/cp ../osqp_sources//include/auxil.h ../osqp_sources//include/constants.h ../osqp_sources//include/cs.h ../osqp_sources//include/ctrlc.h ../osqp_sources//include/error.h ../osqp_sources//include/glob_opts.h ../osqp_sources//include/kkt.h ../osqp_sources//include/lin_alg.h ../osqp_sources//include/lin_sys.h ../osqp_sources//include/osqp.h ../osqp_sources//include/osqp_configure.h ../osqp_sources//include/osqp_proj.h ../osqp_sources//include/polish.h ../osqp_sources//include/scaling.h ../osqp_sources//include/types.h ../osqp_sources//include/util.h ../osqp_sources//include/version.h ../include/osqp/
make[1]: Leaving directory '/tmp/th798/6813878/RtmpmfVAkb/R.INSTALL1e33c71cb5d3f3/osqp/src/osqp'
make[1]: Entering directory '/tmp/th798/6813878/RtmpmfVAkb/R.INSTALL1e33c71cb5d3f3/osqp/src/osqp'
rm -f ../osqp_sources//src/auxil.o ../osqp_sources//src/cs.o ../osqp_sources//src/ctrlc.o ../osqp_sources//src/error.o ../osqp_sources//src/kkt.o ../osqp_sources//src/lin_alg.o ../osqp_sources//src/lin_sys.o ../osqp_sources//src/osqp.o ../osqp_sources//src/polish.o ../osqp_sources//src/proj.o ../osqp_sources//src/scaling.o ../osqp_sources//src/util.o ../osqp_sources//lin_sys/lib_handler.o ../osqp_sources//lin_sys/direct/pardiso/pardiso_interface.o ../osqp_sources//lin_sys/direct/pardiso/pardiso_loader.o ../osqp_sources//lin_sys/direct/qdldl/amd/src/SuiteSparse_config.o ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_1.o ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_2.o ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_aat.o ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_control.o ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_defaults.o ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_info.o ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_order.o ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_post_tree.o ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_postorder.o ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_preprocess.o ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_valid.o ../osqp_sources//lin_sys/direct/qdldl/qdldl_interface.o ../osqp_sources//lin_sys/direct/qdldl/qdldl_sources/src/qdldl.o
make[1]: Leaving directory '/tmp/th798/6813878/RtmpmfVAkb/R.INSTALL1e33c71cb5d3f3/osqp/src/osqp'
g++ -std=gnu++17 -I"/home/th798/lib64/R/include" -DNDEBUG  -I'/projects/genomic-ml/lib64/R/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -I./include/osqp/ -fpic  -g -O2  -c osqp_solve_interface.cpp -o osqp_solve_interface.o
g++ -std=gnu++17 -I"/home/th798/lib64/R/include" -DNDEBUG  -I'/projects/genomic-ml/lib64/R/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -I./include/osqp/ -fpic  -g -O2  -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o osqp.so osqp_solve_interface.o RcppExports.o -L./lib -losqp
installing to /projects/genomic-ml/lib64/R/library/00LOCK-osqp/00new/osqp/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (osqp)

so I guess there is some issue with osqp not seeing the right place to install when we use ~/R/R-devel/bin/R ?

@tdhock
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Owner Author

tdhock commented Dec 8, 2023

the important difference seems to be

-- R includes are in: /home/th798/lib64/R/include

vs

-- R includes are in: R_INCLUDE_DIRS-NOTFOUND

@tdhock
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Owner Author

tdhock commented Dec 8, 2023

removing ~/bin from PATH fixed it

th798@cn103:~$ PATH=/home/th798/.cargo/bin:/usr/share/Modules/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/common/bin:/common/bin R/R-devel/bin/R CMD INSTALL /tmp/th798/6813878/RtmpvuU912/downloaded_packages/osqp_0.6.3.2.tar.gz 
* installing to library ‘/projects/genomic-ml/R/R-devel/library’
* installing *source* package ‘osqp’ ...
** package ‘osqp’ successfully unpacked and MD5 sums checked
** using staged installation
++ : /home/th798/R/R-devel
++ test -z /home/th798/R/R-devel
+++ /home/th798/R/R-devel/bin/R CMD config CC
++ CC=gcc
+++ /home/th798/R/R-devel/bin/R CMD config CFLAGS
++ CFLAGS='-g -O2'
+++ /home/th798/R/R-devel/bin/R CMD config CPPFLAGS
++ CPPFLAGS='-I/home/th798/.conda/envs/emacs1/include -I/home/th798/include'
+++ /home/th798/R/R-devel/bin/R CMD config CXX
++ CXX='g++ -std=gnu++17'
+++ /home/th798/R/R-devel/bin/R CMD config CXXFLAGS
++ CXXFLAGS='-g -O2'
+++ /home/th798/R/R-devel/bin/R CMD config LDFLAGS
++ LDFLAGS='-L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64'
+++ command -v cmake
++ '[' -x /usr/bin/cmake ']'
++ echo 'Making fixes to osqp_sources for CRAN'
Making fixes to osqp_sources for CRAN
++ cd src
++ /home/th798/R/R-devel/bin/Rscript ../inst/58f00bd_fixes/make_fixes.R
[1] TRUE
++ echo '-- Trying to build libosqp.a via cmake ...'
-- Trying to build libosqp.a via cmake ...
++ cd src/osqp_sources
++ mkdir -p build
++ cd build
++ cmake -DR_HOME=/home/th798/R/R-devel -DCMAKE_BUILD_TYPE=Release -DBUILD_SHARED_LIBS:bool=OFF -DCMAKE_POSITION_INDEPENDENT_CODE:bool=ON -DR_LANG=TRUE -DCMAKE_INSTALL_PREFIX:PATH=../../ ..
-- The C compiler identification is GNU 8.5.0
-- The CXX compiler identification is GNU 8.5.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/gcc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/g++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- We are on a Linux system
-- Embedded is OFF
-- Printing is ON
-- Profiling is ON
-- User interrupt is ON
-- Floats are OFF
-- Long integers (64bit) are ON
-- Code coverage is OFF
-- MKL Pardiso: ON
-- We are building the R interface
-- R exec is: /home/th798/R/R-devel/bin/R
-- R root dir is: /home/th798/R/R-devel
-- R includes are in: /home/th798/R/R-devel/include
-- Floats are OFF
-- Long integers (64bit) are ON
-- Configuring done
-- Generating done
-- Build files have been written to: /tmp/th798/6813878/RtmperqVE0/R.INSTALL1e43fa39492f91/osqp/src/osqp_sources/build
++ cmake --build . --target install
[  2%] Building C object lin_sys/direct/qdldl/qdldl_sources/CMakeFiles/qdldlobject.dir/src/qdldl.c.o
[  2%] Built target qdldlobject
[  5%] Building C object lin_sys/direct/CMakeFiles/linsys_pardiso.dir/pardiso/pardiso_interface.c.o
[  8%] Building C object lin_sys/direct/CMakeFiles/linsys_pardiso.dir/pardiso/pardiso_loader.c.o
[  8%] Built target linsys_pardiso
[ 11%] Building C object lin_sys/direct/qdldl/CMakeFiles/linsys_qdldl.dir/amd/src/amd_1.c.o
[ 13%] Building C object lin_sys/direct/qdldl/CMakeFiles/linsys_qdldl.dir/amd/src/amd_2.c.o
[ 16%] Building C object lin_sys/direct/qdldl/CMakeFiles/linsys_qdldl.dir/amd/src/amd_aat.c.o
[ 19%] Building C object lin_sys/direct/qdldl/CMakeFiles/linsys_qdldl.dir/amd/src/amd_control.c.o
[ 22%] Building C object lin_sys/direct/qdldl/CMakeFiles/linsys_qdldl.dir/amd/src/amd_defaults.c.o
[ 25%] Building C object lin_sys/direct/qdldl/CMakeFiles/linsys_qdldl.dir/amd/src/amd_info.c.o
[ 27%] Building C object lin_sys/direct/qdldl/CMakeFiles/linsys_qdldl.dir/amd/src/amd_order.c.o
[ 30%] Building C object lin_sys/direct/qdldl/CMakeFiles/linsys_qdldl.dir/amd/src/amd_post_tree.c.o
[ 33%] Building C object lin_sys/direct/qdldl/CMakeFiles/linsys_qdldl.dir/amd/src/amd_postorder.c.o
[ 36%] Building C object lin_sys/direct/qdldl/CMakeFiles/linsys_qdldl.dir/amd/src/amd_preprocess.c.o
[ 38%] Building C object lin_sys/direct/qdldl/CMakeFiles/linsys_qdldl.dir/amd/src/amd_valid.c.o
[ 41%] Building C object lin_sys/direct/qdldl/CMakeFiles/linsys_qdldl.dir/amd/src/SuiteSparse_config.c.o
[ 44%] Building C object lin_sys/direct/qdldl/CMakeFiles/linsys_qdldl.dir/qdldl_interface.c.o
[ 44%] Built target linsys_qdldl
[ 47%] Building C object CMakeFiles/osqpstatic.dir/src/auxil.c.o
[ 50%] Building C object CMakeFiles/osqpstatic.dir/src/error.c.o
[ 52%] Building C object CMakeFiles/osqpstatic.dir/src/lin_alg.c.o
[ 55%] Building C object CMakeFiles/osqpstatic.dir/src/osqp.c.o
[ 58%] Building C object CMakeFiles/osqpstatic.dir/src/proj.c.o
[ 61%] Building C object CMakeFiles/osqpstatic.dir/src/scaling.c.o
[ 63%] Building C object CMakeFiles/osqpstatic.dir/src/util.c.o
[ 66%] Building C object CMakeFiles/osqpstatic.dir/src/kkt.c.o
[ 69%] Building C object CMakeFiles/osqpstatic.dir/src/cs.c.o
[ 72%] Building C object CMakeFiles/osqpstatic.dir/src/polish.c.o
[ 75%] Building C object CMakeFiles/osqpstatic.dir/src/lin_sys.c.o
[ 77%] Building C object CMakeFiles/osqpstatic.dir/src/ctrlc.c.o
[ 80%] Building C object CMakeFiles/osqpstatic.dir/lin_sys/lib_handler.c.o
[ 83%] Linking C static library out/libosqp.a
[ 83%] Built target osqpstatic
[ 86%] Building C object lin_sys/direct/qdldl/qdldl_sources/CMakeFiles/qdldlstatic.dir/src/qdldl.c.o
[ 88%] Linking C static library out/libqdldl.a
[ 88%] Built target qdldlstatic
[ 91%] Building C object lin_sys/direct/qdldl/qdldl_sources/CMakeFiles/qdldl_example.dir/examples/example.c.o
[ 94%] Linking C executable out/qdldl_example
[ 94%] Built target qdldl_example
[ 97%] Building C object lin_sys/direct/qdldl/qdldl_sources/CMakeFiles/qdldl.dir/src/qdldl.c.o
[100%] Linking C shared library out/libqdldl.so
[100%] Built target qdldl
Install the project...
-- Install configuration: "Release"
-- Installing: /tmp/th798/6813878/RtmperqVE0/R.INSTALL1e43fa39492f91/osqp/src/osqp_sources/build/../../lib64/libosqp.a
-- Installing: /tmp/th798/6813878/RtmperqVE0/R.INSTALL1e43fa39492f91/osqp/src/osqp_sources/build/../../include/osqp/version.h
-- Installing: /tmp/th798/6813878/RtmperqVE0/R.INSTALL1e43fa39492f91/osqp/src/osqp_sources/build/../../include/osqp/auxil.h
-- Installing: /tmp/th798/6813878/RtmperqVE0/R.INSTALL1e43fa39492f91/osqp/src/osqp_sources/build/../../include/osqp/constants.h
-- Installing: /tmp/th798/6813878/RtmperqVE0/R.INSTALL1e43fa39492f91/osqp/src/osqp_sources/build/../../include/osqp/error.h
-- Installing: /tmp/th798/6813878/RtmperqVE0/R.INSTALL1e43fa39492f91/osqp/src/osqp_sources/build/../../include/osqp/glob_opts.h
-- Installing: /tmp/th798/6813878/RtmperqVE0/R.INSTALL1e43fa39492f91/osqp/src/osqp_sources/build/../../include/osqp/lin_alg.h
-- Installing: /tmp/th798/6813878/RtmperqVE0/R.INSTALL1e43fa39492f91/osqp/src/osqp_sources/build/../../include/osqp/osqp.h
-- Installing: /tmp/th798/6813878/RtmperqVE0/R.INSTALL1e43fa39492f91/osqp/src/osqp_sources/build/../../include/osqp/osqp_configure.h
-- Installing: /tmp/th798/6813878/RtmperqVE0/R.INSTALL1e43fa39492f91/osqp/src/osqp_sources/build/../../include/osqp/osqp_proj.h
-- Installing: /tmp/th798/6813878/RtmperqVE0/R.INSTALL1e43fa39492f91/osqp/src/osqp_sources/build/../../include/osqp/scaling.h
-- Installing: /tmp/th798/6813878/RtmperqVE0/R.INSTALL1e43fa39492f91/osqp/src/osqp_sources/build/../../include/osqp/types.h
-- Installing: /tmp/th798/6813878/RtmperqVE0/R.INSTALL1e43fa39492f91/osqp/src/osqp_sources/build/../../include/osqp/util.h
-- Installing: /tmp/th798/6813878/RtmperqVE0/R.INSTALL1e43fa39492f91/osqp/src/osqp_sources/build/../../include/osqp/cs.h
-- Installing: /tmp/th798/6813878/RtmperqVE0/R.INSTALL1e43fa39492f91/osqp/src/osqp_sources/build/../../include/osqp/polish.h
-- Installing: /tmp/th798/6813878/RtmperqVE0/R.INSTALL1e43fa39492f91/osqp/src/osqp_sources/build/../../include/osqp/lin_sys.h
-- Installing: /tmp/th798/6813878/RtmperqVE0/R.INSTALL1e43fa39492f91/osqp/src/osqp_sources/build/../../include/osqp/ctrlc.h
-- Installing: /tmp/th798/6813878/RtmperqVE0/R.INSTALL1e43fa39492f91/osqp/src/osqp_sources/build/../../lib64/cmake/osqp/osqp-targets.cmake
-- Installing: /tmp/th798/6813878/RtmperqVE0/R.INSTALL1e43fa39492f91/osqp/src/osqp_sources/build/../../lib64/cmake/osqp/osqp-targets-release.cmake
-- Installing: /tmp/th798/6813878/RtmperqVE0/R.INSTALL1e43fa39492f91/osqp/src/osqp_sources/build/../../lib64/cmake/osqp/osqp-config.cmake
-- Installing: /tmp/th798/6813878/RtmperqVE0/R.INSTALL1e43fa39492f91/osqp/src/osqp_sources/build/../../lib64/libqdldl.a
-- Installing: /tmp/th798/6813878/RtmperqVE0/R.INSTALL1e43fa39492f91/osqp/src/osqp_sources/build/../../include/qdldl/qdldl.h
-- Installing: /tmp/th798/6813878/RtmperqVE0/R.INSTALL1e43fa39492f91/osqp/src/osqp_sources/build/../../include/qdldl/qdldl_types.h
-- Installing: /tmp/th798/6813878/RtmperqVE0/R.INSTALL1e43fa39492f91/osqp/src/osqp_sources/build/../../lib64/libqdldl.so
-- Installing: /tmp/th798/6813878/RtmperqVE0/R.INSTALL1e43fa39492f91/osqp/src/osqp_sources/build/../../lib/cmake/qdldl/qdldl-targets.cmake
-- Installing: /tmp/th798/6813878/RtmperqVE0/R.INSTALL1e43fa39492f91/osqp/src/osqp_sources/build/../../lib/cmake/qdldl/qdldl-targets-release.cmake
-- Installing: /tmp/th798/6813878/RtmperqVE0/R.INSTALL1e43fa39492f91/osqp/src/osqp_sources/build/../../lib/cmake/qdldl/qdldl-config.cmake
++ cd ..
++ rm -rf build/
++ cd ../../
++ echo '-- Built libosqp.a'
-- Built libosqp.a
** libs
using C++ compiler: ‘g++ (GCC) 8.5.0 20210514 (Red Hat 8.5.0-18)’
using C++17
# The OSQP static library should already exist and
# be in the correct place if we are building via cmake.
# If we find ourselves without cmake installed (e.g. because the
# package is being built in the CRAN servers), then we have
# a go at building the static library here.
echo "Making fixes to osqp_sources for CRAN"
Making fixes to osqp_sources for CRAN
/home/th798/R/R-devel/bin/Rscript ../inst/58f00bd_fixes/make_fixes.R
[1] FALSE
Warning message:
In file.rename(from = "osqp_sources/include/proj.h", to = "osqp_sources/include/osqp_proj.h") :
  cannot rename file 'osqp_sources/include/proj.h' to 'osqp_sources/include/osqp_proj.h', reason 'No such file or directory'
echo "No cmake?  I will try via osqp/Makefile"
No cmake?  I will try via osqp/Makefile
cd osqp; \
	make all CC="gcc" \
	OSQP_FLAGS="-DR_LANG=TRUE" \
	R_INCLUDE_DIR="/home/th798/R/R-devel/include" CFLAGS="-g -O2 " \
	CPICFLAGS="-fpic" ARFLAGS="rv" \
	AR="ar" RANLIB="ranlib" ; \
	make clean
make[1]: Entering directory '/tmp/th798/6813878/RtmperqVE0/R.INSTALL1e43fa39492f91/osqp/src/osqp'
gcc -c ../osqp_sources//src/auxil.c -o ../osqp_sources//src/auxil.o -I../osqp_sources//include -I../osqp_sources//lin_sys -I../osqp_sources//lin_sys/direct/pardiso -I../osqp_sources//lin_sys/direct/qdldl -I../osqp_sources//lin_sys/direct/qdldl/amd/include -I../osqp_sources//lin_sys/direct/qdldl/qdldl_sources/include -I/home/th798/R/R-devel/include -fpic -DR_LANG=TRUE -g -O2 
gcc -c ../osqp_sources//src/cs.c -o ../osqp_sources//src/cs.o -I../osqp_sources//include -I../osqp_sources//lin_sys -I../osqp_sources//lin_sys/direct/pardiso -I../osqp_sources//lin_sys/direct/qdldl -I../osqp_sources//lin_sys/direct/qdldl/amd/include -I../osqp_sources//lin_sys/direct/qdldl/qdldl_sources/include -I/home/th798/R/R-devel/include -fpic -DR_LANG=TRUE -g -O2 
gcc -c ../osqp_sources//src/ctrlc.c -o ../osqp_sources//src/ctrlc.o -I../osqp_sources//include -I../osqp_sources//lin_sys -I../osqp_sources//lin_sys/direct/pardiso -I../osqp_sources//lin_sys/direct/qdldl -I../osqp_sources//lin_sys/direct/qdldl/amd/include -I../osqp_sources//lin_sys/direct/qdldl/qdldl_sources/include -I/home/th798/R/R-devel/include -fpic -DR_LANG=TRUE -g -O2 
gcc -c ../osqp_sources//src/error.c -o ../osqp_sources//src/error.o -I../osqp_sources//include -I../osqp_sources//lin_sys -I../osqp_sources//lin_sys/direct/pardiso -I../osqp_sources//lin_sys/direct/qdldl -I../osqp_sources//lin_sys/direct/qdldl/amd/include -I../osqp_sources//lin_sys/direct/qdldl/qdldl_sources/include -I/home/th798/R/R-devel/include -fpic -DR_LANG=TRUE -g -O2 
gcc -c ../osqp_sources//src/kkt.c -o ../osqp_sources//src/kkt.o -I../osqp_sources//include -I../osqp_sources//lin_sys -I../osqp_sources//lin_sys/direct/pardiso -I../osqp_sources//lin_sys/direct/qdldl -I../osqp_sources//lin_sys/direct/qdldl/amd/include -I../osqp_sources//lin_sys/direct/qdldl/qdldl_sources/include -I/home/th798/R/R-devel/include -fpic -DR_LANG=TRUE -g -O2 
gcc -c ../osqp_sources//src/lin_alg.c -o ../osqp_sources//src/lin_alg.o -I../osqp_sources//include -I../osqp_sources//lin_sys -I../osqp_sources//lin_sys/direct/pardiso -I../osqp_sources//lin_sys/direct/qdldl -I../osqp_sources//lin_sys/direct/qdldl/amd/include -I../osqp_sources//lin_sys/direct/qdldl/qdldl_sources/include -I/home/th798/R/R-devel/include -fpic -DR_LANG=TRUE -g -O2 
gcc -c ../osqp_sources//src/lin_sys.c -o ../osqp_sources//src/lin_sys.o -I../osqp_sources//include -I../osqp_sources//lin_sys -I../osqp_sources//lin_sys/direct/pardiso -I../osqp_sources//lin_sys/direct/qdldl -I../osqp_sources//lin_sys/direct/qdldl/amd/include -I../osqp_sources//lin_sys/direct/qdldl/qdldl_sources/include -I/home/th798/R/R-devel/include -fpic -DR_LANG=TRUE -g -O2 
gcc -c ../osqp_sources//src/osqp.c -o ../osqp_sources//src/osqp.o -I../osqp_sources//include -I../osqp_sources//lin_sys -I../osqp_sources//lin_sys/direct/pardiso -I../osqp_sources//lin_sys/direct/qdldl -I../osqp_sources//lin_sys/direct/qdldl/amd/include -I../osqp_sources//lin_sys/direct/qdldl/qdldl_sources/include -I/home/th798/R/R-devel/include -fpic -DR_LANG=TRUE -g -O2 
gcc -c ../osqp_sources//src/polish.c -o ../osqp_sources//src/polish.o -I../osqp_sources//include -I../osqp_sources//lin_sys -I../osqp_sources//lin_sys/direct/pardiso -I../osqp_sources//lin_sys/direct/qdldl -I../osqp_sources//lin_sys/direct/qdldl/amd/include -I../osqp_sources//lin_sys/direct/qdldl/qdldl_sources/include -I/home/th798/R/R-devel/include -fpic -DR_LANG=TRUE -g -O2 
gcc -c ../osqp_sources//src/proj.c -o ../osqp_sources//src/proj.o -I../osqp_sources//include -I../osqp_sources//lin_sys -I../osqp_sources//lin_sys/direct/pardiso -I../osqp_sources//lin_sys/direct/qdldl -I../osqp_sources//lin_sys/direct/qdldl/amd/include -I../osqp_sources//lin_sys/direct/qdldl/qdldl_sources/include -I/home/th798/R/R-devel/include -fpic -DR_LANG=TRUE -g -O2 
gcc -c ../osqp_sources//src/scaling.c -o ../osqp_sources//src/scaling.o -I../osqp_sources//include -I../osqp_sources//lin_sys -I../osqp_sources//lin_sys/direct/pardiso -I../osqp_sources//lin_sys/direct/qdldl -I../osqp_sources//lin_sys/direct/qdldl/amd/include -I../osqp_sources//lin_sys/direct/qdldl/qdldl_sources/include -I/home/th798/R/R-devel/include -fpic -DR_LANG=TRUE -g -O2 
gcc -c ../osqp_sources//src/util.c -o ../osqp_sources//src/util.o -I../osqp_sources//include -I../osqp_sources//lin_sys -I../osqp_sources//lin_sys/direct/pardiso -I../osqp_sources//lin_sys/direct/qdldl -I../osqp_sources//lin_sys/direct/qdldl/amd/include -I../osqp_sources//lin_sys/direct/qdldl/qdldl_sources/include -I/home/th798/R/R-devel/include -fpic -DR_LANG=TRUE -g -O2 
gcc -c ../osqp_sources//lin_sys/lib_handler.c -o ../osqp_sources//lin_sys/lib_handler.o -I../osqp_sources//include -I../osqp_sources//lin_sys -I../osqp_sources//lin_sys/direct/pardiso -I../osqp_sources//lin_sys/direct/qdldl -I../osqp_sources//lin_sys/direct/qdldl/amd/include -I../osqp_sources//lin_sys/direct/qdldl/qdldl_sources/include -I/home/th798/R/R-devel/include -fpic -DR_LANG=TRUE -g -O2 
gcc -c ../osqp_sources//lin_sys/direct/pardiso/pardiso_interface.c -o ../osqp_sources//lin_sys/direct/pardiso/pardiso_interface.o -I../osqp_sources//include -I../osqp_sources//lin_sys -I../osqp_sources//lin_sys/direct/pardiso -I../osqp_sources//lin_sys/direct/qdldl -I../osqp_sources//lin_sys/direct/qdldl/amd/include -I../osqp_sources//lin_sys/direct/qdldl/qdldl_sources/include -I/home/th798/R/R-devel/include -fpic -DR_LANG=TRUE -g -O2 
gcc -c ../osqp_sources//lin_sys/direct/pardiso/pardiso_loader.c -o ../osqp_sources//lin_sys/direct/pardiso/pardiso_loader.o -I../osqp_sources//include -I../osqp_sources//lin_sys -I../osqp_sources//lin_sys/direct/pardiso -I../osqp_sources//lin_sys/direct/qdldl -I../osqp_sources//lin_sys/direct/qdldl/amd/include -I../osqp_sources//lin_sys/direct/qdldl/qdldl_sources/include -I/home/th798/R/R-devel/include -fpic -DR_LANG=TRUE -g -O2 
gcc -c ../osqp_sources//lin_sys/direct/qdldl/amd/src/SuiteSparse_config.c -o ../osqp_sources//lin_sys/direct/qdldl/amd/src/SuiteSparse_config.o -I../osqp_sources//include -I../osqp_sources//lin_sys -I../osqp_sources//lin_sys/direct/pardiso -I../osqp_sources//lin_sys/direct/qdldl -I../osqp_sources//lin_sys/direct/qdldl/amd/include -I../osqp_sources//lin_sys/direct/qdldl/qdldl_sources/include -I/home/th798/R/R-devel/include -fpic -DR_LANG=TRUE -g -O2 
gcc -c ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_1.c -o ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_1.o -I../osqp_sources//include -I../osqp_sources//lin_sys -I../osqp_sources//lin_sys/direct/pardiso -I../osqp_sources//lin_sys/direct/qdldl -I../osqp_sources//lin_sys/direct/qdldl/amd/include -I../osqp_sources//lin_sys/direct/qdldl/qdldl_sources/include -I/home/th798/R/R-devel/include -fpic -DR_LANG=TRUE -g -O2 
gcc -c ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_2.c -o ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_2.o -I../osqp_sources//include -I../osqp_sources//lin_sys -I../osqp_sources//lin_sys/direct/pardiso -I../osqp_sources//lin_sys/direct/qdldl -I../osqp_sources//lin_sys/direct/qdldl/amd/include -I../osqp_sources//lin_sys/direct/qdldl/qdldl_sources/include -I/home/th798/R/R-devel/include -fpic -DR_LANG=TRUE -g -O2 
gcc -c ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_aat.c -o ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_aat.o -I../osqp_sources//include -I../osqp_sources//lin_sys -I../osqp_sources//lin_sys/direct/pardiso -I../osqp_sources//lin_sys/direct/qdldl -I../osqp_sources//lin_sys/direct/qdldl/amd/include -I../osqp_sources//lin_sys/direct/qdldl/qdldl_sources/include -I/home/th798/R/R-devel/include -fpic -DR_LANG=TRUE -g -O2 
gcc -c ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_control.c -o ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_control.o -I../osqp_sources//include -I../osqp_sources//lin_sys -I../osqp_sources//lin_sys/direct/pardiso -I../osqp_sources//lin_sys/direct/qdldl -I../osqp_sources//lin_sys/direct/qdldl/amd/include -I../osqp_sources//lin_sys/direct/qdldl/qdldl_sources/include -I/home/th798/R/R-devel/include -fpic -DR_LANG=TRUE -g -O2 
gcc -c ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_defaults.c -o ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_defaults.o -I../osqp_sources//include -I../osqp_sources//lin_sys -I../osqp_sources//lin_sys/direct/pardiso -I../osqp_sources//lin_sys/direct/qdldl -I../osqp_sources//lin_sys/direct/qdldl/amd/include -I../osqp_sources//lin_sys/direct/qdldl/qdldl_sources/include -I/home/th798/R/R-devel/include -fpic -DR_LANG=TRUE -g -O2 
gcc -c ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_info.c -o ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_info.o -I../osqp_sources//include -I../osqp_sources//lin_sys -I../osqp_sources//lin_sys/direct/pardiso -I../osqp_sources//lin_sys/direct/qdldl -I../osqp_sources//lin_sys/direct/qdldl/amd/include -I../osqp_sources//lin_sys/direct/qdldl/qdldl_sources/include -I/home/th798/R/R-devel/include -fpic -DR_LANG=TRUE -g -O2 
gcc -c ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_order.c -o ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_order.o -I../osqp_sources//include -I../osqp_sources//lin_sys -I../osqp_sources//lin_sys/direct/pardiso -I../osqp_sources//lin_sys/direct/qdldl -I../osqp_sources//lin_sys/direct/qdldl/amd/include -I../osqp_sources//lin_sys/direct/qdldl/qdldl_sources/include -I/home/th798/R/R-devel/include -fpic -DR_LANG=TRUE -g -O2 
gcc -c ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_post_tree.c -o ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_post_tree.o -I../osqp_sources//include -I../osqp_sources//lin_sys -I../osqp_sources//lin_sys/direct/pardiso -I../osqp_sources//lin_sys/direct/qdldl -I../osqp_sources//lin_sys/direct/qdldl/amd/include -I../osqp_sources//lin_sys/direct/qdldl/qdldl_sources/include -I/home/th798/R/R-devel/include -fpic -DR_LANG=TRUE -g -O2 
gcc -c ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_postorder.c -o ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_postorder.o -I../osqp_sources//include -I../osqp_sources//lin_sys -I../osqp_sources//lin_sys/direct/pardiso -I../osqp_sources//lin_sys/direct/qdldl -I../osqp_sources//lin_sys/direct/qdldl/amd/include -I../osqp_sources//lin_sys/direct/qdldl/qdldl_sources/include -I/home/th798/R/R-devel/include -fpic -DR_LANG=TRUE -g -O2 
gcc -c ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_preprocess.c -o ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_preprocess.o -I../osqp_sources//include -I../osqp_sources//lin_sys -I../osqp_sources//lin_sys/direct/pardiso -I../osqp_sources//lin_sys/direct/qdldl -I../osqp_sources//lin_sys/direct/qdldl/amd/include -I../osqp_sources//lin_sys/direct/qdldl/qdldl_sources/include -I/home/th798/R/R-devel/include -fpic -DR_LANG=TRUE -g -O2 
gcc -c ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_valid.c -o ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_valid.o -I../osqp_sources//include -I../osqp_sources//lin_sys -I../osqp_sources//lin_sys/direct/pardiso -I../osqp_sources//lin_sys/direct/qdldl -I../osqp_sources//lin_sys/direct/qdldl/amd/include -I../osqp_sources//lin_sys/direct/qdldl/qdldl_sources/include -I/home/th798/R/R-devel/include -fpic -DR_LANG=TRUE -g -O2 
gcc -c ../osqp_sources//lin_sys/direct/qdldl/qdldl_interface.c -o ../osqp_sources//lin_sys/direct/qdldl/qdldl_interface.o -I../osqp_sources//include -I../osqp_sources//lin_sys -I../osqp_sources//lin_sys/direct/pardiso -I../osqp_sources//lin_sys/direct/qdldl -I../osqp_sources//lin_sys/direct/qdldl/amd/include -I../osqp_sources//lin_sys/direct/qdldl/qdldl_sources/include -I/home/th798/R/R-devel/include -fpic -DR_LANG=TRUE -g -O2 
gcc -c ../osqp_sources//lin_sys/direct/qdldl/qdldl_sources/src/qdldl.c -o ../osqp_sources//lin_sys/direct/qdldl/qdldl_sources/src/qdldl.o -I../osqp_sources//include -I../osqp_sources//lin_sys -I../osqp_sources//lin_sys/direct/pardiso -I../osqp_sources//lin_sys/direct/qdldl -I../osqp_sources//lin_sys/direct/qdldl/amd/include -I../osqp_sources//lin_sys/direct/qdldl/qdldl_sources/include -I/home/th798/R/R-devel/include -fpic -DR_LANG=TRUE -g -O2 
mkdir -p ../lib/
ar rv ../lib//libosqp.a ../osqp_sources//src/auxil.o ../osqp_sources//src/cs.o ../osqp_sources//src/ctrlc.o ../osqp_sources//src/error.o ../osqp_sources//src/kkt.o ../osqp_sources//src/lin_alg.o ../osqp_sources//src/lin_sys.o ../osqp_sources//src/osqp.o ../osqp_sources//src/polish.o ../osqp_sources//src/proj.o ../osqp_sources//src/scaling.o ../osqp_sources//src/util.o ../osqp_sources//lin_sys/lib_handler.o ../osqp_sources//lin_sys/direct/pardiso/pardiso_interface.o ../osqp_sources//lin_sys/direct/pardiso/pardiso_loader.o ../osqp_sources//lin_sys/direct/qdldl/amd/src/SuiteSparse_config.o ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_1.o ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_2.o ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_aat.o ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_control.o ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_defaults.o ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_info.o ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_order.o ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_post_tree.o ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_postorder.o ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_preprocess.o ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_valid.o ../osqp_sources//lin_sys/direct/qdldl/qdldl_interface.o ../osqp_sources//lin_sys/direct/qdldl/qdldl_sources/src/qdldl.o
ar: creating ../lib//libosqp.a
a - ../osqp_sources//src/auxil.o
a - ../osqp_sources//src/cs.o
a - ../osqp_sources//src/ctrlc.o
a - ../osqp_sources//src/error.o
a - ../osqp_sources//src/kkt.o
a - ../osqp_sources//src/lin_alg.o
a - ../osqp_sources//src/lin_sys.o
a - ../osqp_sources//src/osqp.o
a - ../osqp_sources//src/polish.o
a - ../osqp_sources//src/proj.o
a - ../osqp_sources//src/scaling.o
a - ../osqp_sources//src/util.o
a - ../osqp_sources//lin_sys/lib_handler.o
a - ../osqp_sources//lin_sys/direct/pardiso/pardiso_interface.o
a - ../osqp_sources//lin_sys/direct/pardiso/pardiso_loader.o
a - ../osqp_sources//lin_sys/direct/qdldl/amd/src/SuiteSparse_config.o
a - ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_1.o
a - ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_2.o
a - ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_aat.o
a - ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_control.o
a - ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_defaults.o
a - ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_info.o
a - ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_order.o
a - ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_post_tree.o
a - ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_postorder.o
a - ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_preprocess.o
a - ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_valid.o
a - ../osqp_sources//lin_sys/direct/qdldl/qdldl_interface.o
a - ../osqp_sources//lin_sys/direct/qdldl/qdldl_sources/src/qdldl.o
ranlib ../lib//libosqp.a
mkdir -p ../include/osqp/
cp ../osqp_sources//include/*.h ../include/osqp/
make[1]: Leaving directory '/tmp/th798/6813878/RtmperqVE0/R.INSTALL1e43fa39492f91/osqp/src/osqp'
make[1]: Entering directory '/tmp/th798/6813878/RtmperqVE0/R.INSTALL1e43fa39492f91/osqp/src/osqp'
rm -f ../osqp_sources//src/auxil.o ../osqp_sources//src/cs.o ../osqp_sources//src/ctrlc.o ../osqp_sources//src/error.o ../osqp_sources//src/kkt.o ../osqp_sources//src/lin_alg.o ../osqp_sources//src/lin_sys.o ../osqp_sources//src/osqp.o ../osqp_sources//src/polish.o ../osqp_sources//src/proj.o ../osqp_sources//src/scaling.o ../osqp_sources//src/util.o ../osqp_sources//lin_sys/lib_handler.o ../osqp_sources//lin_sys/direct/pardiso/pardiso_interface.o ../osqp_sources//lin_sys/direct/pardiso/pardiso_loader.o ../osqp_sources//lin_sys/direct/qdldl/amd/src/SuiteSparse_config.o ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_1.o ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_2.o ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_aat.o ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_control.o ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_defaults.o ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_info.o ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_order.o ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_post_tree.o ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_postorder.o ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_preprocess.o ../osqp_sources//lin_sys/direct/qdldl/amd/src/amd_valid.o ../osqp_sources//lin_sys/direct/qdldl/qdldl_interface.o ../osqp_sources//lin_sys/direct/qdldl/qdldl_sources/src/qdldl.o
make[1]: Leaving directory '/tmp/th798/6813878/RtmperqVE0/R.INSTALL1e43fa39492f91/osqp/src/osqp'
g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG  -I'/projects/genomic-ml/R/R-devel/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -I./include/osqp/ -fpic  -g -O2  -c osqp_solve_interface.cpp -o osqp_solve_interface.o
g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG  -I'/projects/genomic-ml/R/R-devel/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -I./include/osqp/ -fpic  -g -O2  -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o osqp.so osqp_solve_interface.o RcppExports.o -L./lib -losqp
installing to /projects/genomic-ml/R/R-devel/library/00LOCK-osqp/00new/osqp/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (osqp)

@tdhock
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tdhock commented Dec 8, 2023

different lines

-- R exec is: /home/th798/R/R-devel/bin/R
-- R root dir is: /home/th798/R/R-devel
-- R includes are in: /home/th798/R/R-devel/include

vs

-- R exec is: /home/th798/bin/R
-- R root dir is: /home/th798/lib64/R
-- R includes are in: /home/th798/lib64/R/include

@tdhock
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tdhock commented Dec 8, 2023

I did git clone git@github.com:tdhock/osqp-r ~/R/osqp-tdhock then cp -r osqp/src/osqp_sources/* ~/R/osqp-tdhock/src/osqp_sources/ then to reproduce the issue reliably from the source R package dir, you first have to rm the cmake build dir,

rm -rf osqp-tdhock/src/osqp_sources/build/ && PATH=/home/th798/.cargo/bin:/usr/share/Modules/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/common/bin:/common/bin ~/R/R-devel/bin/R CMD INSTALL ~/R/osqp-tdhock/

works if PATH does not include ~/bin, does not work otherwise.

@tdhock
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tdhock commented Dec 8, 2023

https://github.com/osqp/osqp/blob/master/configure/cmake/FindR.cmake contains

  find_path(R_INCLUDE_DIRS R.h
            PATHS /usr/local/lib /usr/local/lib64 /usr/share /usr/include ${R_ROOT_DIR} PATH_SUFFIXES include R R/include)

the docs https://cmake.org/cmake/help/latest/command/find_path.html say that "This command is used to find a directory containing the named file. A cache entry, or a normal variable if NO_CACHE is specified, named by is created to store the result of this command. If the file in a directory is found the result is stored in the variable and the search will not be repeated unless the variable is cleared. If nothing is found, the result will be -NOTFOUND."

I put a message before that,

message(STATUS "TDH R_ROOT_DIR: ${R_ROOT_DIR}")

and I see

th798@cn103:~/R$ rm -rf osqp-tdhock/src/osqp_sources/build/ && ~/R/R-devel/bin/R CMD INSTALL ~/R/osqp-tdhock/
...
-- TDH R_ROOT_DIR: WARNING: ignoring environment value of R_HOME
/home/th798/lib64/R
-- R exec is: /home/th798/bin/R
-- R root dir is: WARNING: ignoring environment value of R_HOME
/home/th798/lib64/R
-- R includes are in: R_INCLUDE_DIRS-NOTFOUND
...
th798@cn103:~/R$ rm -rf osqp-tdhock/src/osqp_sources/build/ && PATH=/home/th798/.cargo/bin:/usr/share/Modules/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/common/bin:/common/bin ~/R/R-devel/bin/R CMD INSTALL ~/R/osqp-tdhock/
...
-- TDH R_ROOT_DIR: /home/th798/R/R-devel
-- R exec is: /home/th798/R/R-devel/bin/R
-- R root dir is: /home/th798/R/R-devel
-- R includes are in: /home/th798/R/R-devel/include
...

@tdhock
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tdhock commented Dec 8, 2023

the program comes from this line

message(STATUS "TDH R_HOME: ${R_HOME}")
find_program(R_EXEC NAMES R R.exe PATHS ${R_HOME}/bin)
message(STATUS "TDH R_EXEC: ${R_EXEC}")

which says

-- TDH R_HOME: /home/th798/R/R-devel
-- TDH R_EXEC: /home/th798/bin/R
-- TDH R_ROOT_DIR: WARNING: ignoring environment value of R_HOME
/home/th798/lib64/R

meaning R_HOME is correct but R_EXEC is not finding it. it should be searched before path.
https://cmake.org/cmake/help/latest/command/find_program.html says "HINTS, PATHS
Specify directories to search in addition to the default locations. The ENV var sub-option reads paths from a system environment variable." it also explains that HINTS is searched before PATHS. that is the fix

th798@cn103:~/R$ rm -rf ~/R/osqp-tdhock/src/osqp_sources/build/ && ~/R/R-devel/bin/R CMD INSTALL ~/R/osqp-tdhock/
* installing to library ‘/projects/genomic-ml/R/R-devel/library’
* installing *source* package ‘osqp’ ...
** using staged installation
++ : /home/th798/R/R-devel
++ test -z /home/th798/R/R-devel
+++ /home/th798/R/R-devel/bin/R CMD config CC
++ CC=gcc
+++ /home/th798/R/R-devel/bin/R CMD config CFLAGS
++ CFLAGS='-g -O2'
+++ /home/th798/R/R-devel/bin/R CMD config CPPFLAGS
++ CPPFLAGS='-I/home/th798/.conda/envs/emacs1/include -I/home/th798/include'
+++ /home/th798/R/R-devel/bin/R CMD config CXX
++ CXX='g++ -std=gnu++17'
+++ /home/th798/R/R-devel/bin/R CMD config CXXFLAGS
++ CXXFLAGS='-g -O2'
+++ /home/th798/R/R-devel/bin/R CMD config LDFLAGS
++ LDFLAGS='-L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64'
+++ command -v cmake
++ '[' -x /home/th798/.conda/envs/emacs1/bin/cmake ']'
++ echo 'Making fixes to osqp_sources for CRAN'
Making fixes to osqp_sources for CRAN
++ cd src
++ /home/th798/R/R-devel/bin/Rscript ../inst/58f00bd_fixes/make_fixes.R
[1] FALSE
Warning message:
In file.rename(from = "osqp_sources/include/proj.h", to = "osqp_sources/include/osqp_proj.h") :
  cannot rename file 'osqp_sources/include/proj.h' to 'osqp_sources/include/osqp_proj.h', reason 'No such file or directory'
++ echo '-- Trying to build libosqp.a via cmake ...'
-- Trying to build libosqp.a via cmake ...
++ cd src/osqp_sources
++ mkdir -p build
++ cd build
++ cmake -DR_HOME=/home/th798/R/R-devel -DCMAKE_BUILD_TYPE=Release -DBUILD_SHARED_LIBS:bool=OFF -DCMAKE_POSITION_INDEPENDENT_CODE:bool=ON -DR_LANG=TRUE -DCMAKE_INSTALL_PREFIX:PATH=../../ ..
-- The C compiler identification is GNU 8.5.0
-- The CXX compiler identification is GNU 8.5.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/gcc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/g++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- We are on a Linux system
-- Embedded is OFF
-- Printing is ON
-- Profiling is ON
-- User interrupt is ON
-- Floats are OFF
-- Long integers (64bit) are ON
-- Code coverage is OFF
-- MKL Pardiso: ON
-- We are building the R interface
-- TDH R_HOME: /home/th798/R/R-devel
-- TDH R_EXEC: /home/th798/R/R-devel/bin/R
-- TDH R_ROOT_DIR: /home/th798/R/R-devel
-- R exec is: /home/th798/R/R-devel/bin/R
-- R root dir is: /home/th798/R/R-devel
-- R includes are in: /home/th798/R/R-devel/include
-- Floats are OFF
-- Long integers (64bit) are ON
-- Configuring done
-- Generating done
-- Build files have been written to: /projects/genomic-ml/R/osqp-tdhock/src/osqp_sources/build
++ cmake --build . --target install
[  2%] Building C object lin_sys/direct/qdldl/qdldl_sources/CMakeFiles/qdldlobject.dir/src/qdldl.c.o
[  2%] Built target qdldlobject
[  5%] Building C object lin_sys/direct/CMakeFiles/linsys_pardiso.dir/pardiso/pardiso_interface.c.o
[  8%] Building C object lin_sys/direct/CMakeFiles/linsys_pardiso.dir/pardiso/pardiso_loader.c.o
[  8%] Built target linsys_pardiso
[ 11%] Building C object lin_sys/direct/qdldl/CMakeFiles/linsys_qdldl.dir/amd/src/amd_1.c.o
[ 13%] Building C object lin_sys/direct/qdldl/CMakeFiles/linsys_qdldl.dir/amd/src/amd_2.c.o
[ 16%] Building C object lin_sys/direct/qdldl/CMakeFiles/linsys_qdldl.dir/amd/src/amd_aat.c.o
[ 19%] Building C object lin_sys/direct/qdldl/CMakeFiles/linsys_qdldl.dir/amd/src/amd_control.c.o
[ 22%] Building C object lin_sys/direct/qdldl/CMakeFiles/linsys_qdldl.dir/amd/src/amd_defaults.c.o
[ 25%] Building C object lin_sys/direct/qdldl/CMakeFiles/linsys_qdldl.dir/amd/src/amd_info.c.o
[ 27%] Building C object lin_sys/direct/qdldl/CMakeFiles/linsys_qdldl.dir/amd/src/amd_order.c.o
[ 30%] Building C object lin_sys/direct/qdldl/CMakeFiles/linsys_qdldl.dir/amd/src/amd_post_tree.c.o
[ 33%] Building C object lin_sys/direct/qdldl/CMakeFiles/linsys_qdldl.dir/amd/src/amd_postorder.c.o
[ 36%] Building C object lin_sys/direct/qdldl/CMakeFiles/linsys_qdldl.dir/amd/src/amd_preprocess.c.o
[ 38%] Building C object lin_sys/direct/qdldl/CMakeFiles/linsys_qdldl.dir/amd/src/amd_valid.c.o
[ 41%] Building C object lin_sys/direct/qdldl/CMakeFiles/linsys_qdldl.dir/amd/src/SuiteSparse_config.c.o
[ 44%] Building C object lin_sys/direct/qdldl/CMakeFiles/linsys_qdldl.dir/qdldl_interface.c.o
[ 44%] Built target linsys_qdldl
[ 47%] Building C object CMakeFiles/osqpstatic.dir/src/auxil.c.o
[ 50%] Building C object CMakeFiles/osqpstatic.dir/src/error.c.o
[ 52%] Building C object CMakeFiles/osqpstatic.dir/src/lin_alg.c.o
[ 55%] Building C object CMakeFiles/osqpstatic.dir/src/osqp.c.o
[ 58%] Building C object CMakeFiles/osqpstatic.dir/src/proj.c.o
[ 61%] Building C object CMakeFiles/osqpstatic.dir/src/scaling.c.o
[ 63%] Building C object CMakeFiles/osqpstatic.dir/src/util.c.o
[ 66%] Building C object CMakeFiles/osqpstatic.dir/src/kkt.c.o
[ 69%] Building C object CMakeFiles/osqpstatic.dir/src/cs.c.o
[ 72%] Building C object CMakeFiles/osqpstatic.dir/src/polish.c.o
[ 75%] Building C object CMakeFiles/osqpstatic.dir/src/lin_sys.c.o
[ 77%] Building C object CMakeFiles/osqpstatic.dir/src/ctrlc.c.o
[ 80%] Building C object CMakeFiles/osqpstatic.dir/lin_sys/lib_handler.c.o
[ 83%] Linking C static library out/libosqp.a
[ 83%] Built target osqpstatic
[ 86%] Building C object lin_sys/direct/qdldl/qdldl_sources/CMakeFiles/qdldlstatic.dir/src/qdldl.c.o
[ 88%] Linking C static library out/libqdldl.a
[ 88%] Built target qdldlstatic
[ 91%] Building C object lin_sys/direct/qdldl/qdldl_sources/CMakeFiles/qdldl.dir/src/qdldl.c.o
[ 94%] Linking C shared library out/libqdldl.so
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[100%] Linking C executable out/qdldl_example
[100%] Built target qdldl_example
Install the project...
-- Install configuration: "Release"
-- Installing: /projects/genomic-ml/R/osqp-tdhock/src/osqp_sources/build/../../lib64/libosqp.a
-- Up-to-date: /projects/genomic-ml/R/osqp-tdhock/src/osqp_sources/build/../../include/osqp/version.h
-- Up-to-date: /projects/genomic-ml/R/osqp-tdhock/src/osqp_sources/build/../../include/osqp/auxil.h
-- Up-to-date: /projects/genomic-ml/R/osqp-tdhock/src/osqp_sources/build/../../include/osqp/constants.h
-- Up-to-date: /projects/genomic-ml/R/osqp-tdhock/src/osqp_sources/build/../../include/osqp/error.h
-- Up-to-date: /projects/genomic-ml/R/osqp-tdhock/src/osqp_sources/build/../../include/osqp/glob_opts.h
-- Up-to-date: /projects/genomic-ml/R/osqp-tdhock/src/osqp_sources/build/../../include/osqp/lin_alg.h
-- Up-to-date: /projects/genomic-ml/R/osqp-tdhock/src/osqp_sources/build/../../include/osqp/osqp.h
-- Up-to-date: /projects/genomic-ml/R/osqp-tdhock/src/osqp_sources/build/../../include/osqp/osqp_configure.h
-- Up-to-date: /projects/genomic-ml/R/osqp-tdhock/src/osqp_sources/build/../../include/osqp/osqp_proj.h
-- Up-to-date: /projects/genomic-ml/R/osqp-tdhock/src/osqp_sources/build/../../include/osqp/scaling.h
-- Up-to-date: /projects/genomic-ml/R/osqp-tdhock/src/osqp_sources/build/../../include/osqp/types.h
-- Up-to-date: /projects/genomic-ml/R/osqp-tdhock/src/osqp_sources/build/../../include/osqp/util.h
-- Up-to-date: /projects/genomic-ml/R/osqp-tdhock/src/osqp_sources/build/../../include/osqp/cs.h
-- Up-to-date: /projects/genomic-ml/R/osqp-tdhock/src/osqp_sources/build/../../include/osqp/polish.h
-- Up-to-date: /projects/genomic-ml/R/osqp-tdhock/src/osqp_sources/build/../../include/osqp/lin_sys.h
-- Up-to-date: /projects/genomic-ml/R/osqp-tdhock/src/osqp_sources/build/../../include/osqp/ctrlc.h
-- Old export file "../../lib64/cmake/osqp/osqp-targets.cmake" will be replaced.  Removing files [/projects/genomic-ml/R/osqp-tdhock/src/osqp_sources/build/../../lib64/cmake/osqp/osqp-targets-release.cmake].
-- Installing: /projects/genomic-ml/R/osqp-tdhock/src/osqp_sources/build/../../lib64/cmake/osqp/osqp-targets.cmake
-- Installing: /projects/genomic-ml/R/osqp-tdhock/src/osqp_sources/build/../../lib64/cmake/osqp/osqp-targets-release.cmake
-- Installing: /projects/genomic-ml/R/osqp-tdhock/src/osqp_sources/build/../../lib64/cmake/osqp/osqp-config.cmake
-- Installing: /projects/genomic-ml/R/osqp-tdhock/src/osqp_sources/build/../../lib64/libqdldl.a
-- Up-to-date: /projects/genomic-ml/R/osqp-tdhock/src/osqp_sources/build/../../include/qdldl/qdldl.h
-- Up-to-date: /projects/genomic-ml/R/osqp-tdhock/src/osqp_sources/build/../../include/qdldl/qdldl_types.h
-- Installing: /projects/genomic-ml/R/osqp-tdhock/src/osqp_sources/build/../../lib64/libqdldl.so
-- Old export file "../../lib/cmake/qdldl/qdldl-targets.cmake" will be replaced.  Removing files [/projects/genomic-ml/R/osqp-tdhock/src/osqp_sources/build/../../lib/cmake/qdldl/qdldl-targets-release.cmake].
-- Installing: /projects/genomic-ml/R/osqp-tdhock/src/osqp_sources/build/../../lib/cmake/qdldl/qdldl-targets.cmake
-- Installing: /projects/genomic-ml/R/osqp-tdhock/src/osqp_sources/build/../../lib/cmake/qdldl/qdldl-targets-release.cmake
-- Installing: /projects/genomic-ml/R/osqp-tdhock/src/osqp_sources/build/../../lib/cmake/qdldl/qdldl-config.cmake
++ cd ..
++ rm -rf build/
++ cd ../../
++ echo '-- Built libosqp.a'
-- Built libosqp.a
** libs
using C++ compiler: ‘g++ (GCC) 8.5.0 20210514 (Red Hat 8.5.0-18)’
using C++17
make: Nothing to be done for 'all'.
installing to /projects/genomic-ml/R/R-devel/library/00LOCK-osqp-tdhock/00new/osqp/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (osqp)

@tdhock
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tdhock commented Dec 8, 2023 

find_program(R_EXEC NAMES R R.exe HINTS ${R_HOME}/bin)

above is what I tried, which worked.

actually there is already a change in https://github.com/osqp/osqp/blob/master/configure/cmake/FindR.cmake

find_program(R_EXEC NAMES R Rdev R.exe HINTS ENV R_HOME /opt/R-devel PATH_SUFFIXES bin)

and that works too, so no need to file issue/pr with osqp, just need to use their dev version, or wait until they release their new code.

@tdhock tdhock closed this as completed Dec 8, 2023
@tdhock tdhock mentioned this issue Dec 8, 2023
Open
@tdhock tdhock mentioned this issue Jan 22, 2024
Closed
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