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javacpp_datatype.clj
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javacpp_datatype.clj
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(ns tech.javacpp-datatype
(:require [tech.datatype.core :as dtype]
[tech.datatype.base :as dtype-base]
[tech.datatype.marshal :as marshal]
[clojure.core.matrix.protocols :as mp]
[think.resource.core :as resource])
(:import [org.bytedeco.javacpp
BytePointer IntPointer LongPointer DoublePointer
Pointer PointerPointer FloatPointer ShortPointer
Pointer$DeallocatorReference Loader]
[java.lang.reflect Field]))
(set! *warn-on-reflection* true)
(set! *unchecked-math* :warn-on-boxed)
;;Necessary for testing
(comment
(import org.bytedeco.javacpp.opencv_core))
;;!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
;; disable the javacpp auto-gc system. This causes spurious OOM errors
;; and runs the GC endlessly at times when the amount of C++ memory allocated
;; is large compared to the maximum java heap size.
(System/setProperty "org.bytedeco.javacpp.nopointergc" "true")
(extend-protocol dtype-base/PDatatype
BytePointer
(get-datatype [ptr] :int8)
ShortPointer
(get-datatype [ptr] :int16)
IntPointer
(get-datatype [ptr] :int32)
LongPointer
(get-datatype [ptr] :int64)
FloatPointer
(get-datatype [ptr] :float32)
DoublePointer
(get-datatype [ptr] :float64))
(defn make-pointer-of-type
^Pointer [datatype size-or-data]
(let [ary (dtype/make-array-of-type datatype size-or-data)]
(condp = datatype
:int8 (BytePointer. ^bytes ary)
:int16 (ShortPointer. ^shorts ary)
:int32 (IntPointer. ^ints ary)
:int64 (LongPointer. ^longs ary)
:float32 (FloatPointer. ^floats ary)
:float64 (DoublePointer. ^doubles ary))))
(defn make-empty-pointer-of-type
^Pointer [datatype]
(condp = datatype
:int8 (BytePointer.)
:int16 (ShortPointer.)
:int32 (IntPointer.)
:int64 (LongPointer.)
:float32 (FloatPointer.)
:float64 (DoublePointer.)))
(defn- get-private-field [^Class cls field-name]
(let [^Field field (first (filter
(fn [^Field x] (.. x getName (equals field-name)))
(.getDeclaredFields cls)))]
(.setAccessible field true)
field))
(defonce address-field (get-private-field Pointer "address"))
(defonce limit-field (get-private-field Pointer "limit"))
(defonce capacity-field (get-private-field Pointer "capacity"))
(defonce position-field (get-private-field Pointer "position"))
(defonce deallocator-field (get-private-field Pointer "deallocator"))
(defn offset-pointer
"Create a 'fake' temporary pointer to use in api calls. Note this function is
threadsafe while (.position ptr offset) is not."
^Pointer [^Pointer ptr ^long offset]
(let [addr (.address ptr)
pos (.position ptr)
retval (make-empty-pointer-of-type (dtype/get-datatype ptr))]
;;Do not ever set position - this will fail in most api calls as the javacpp
;;code for dealing with position is incorrect.
(.set ^Field address-field retval (+ addr
(* (+ pos offset)
(dtype-base/datatype->byte-size
(dtype-base/get-datatype ptr)))))
retval))
(defn duplicate-pointer
^Pointer [^Pointer ptr]
(let [addr (.address ptr)
pos (.position ptr)
limit (.limit ptr)
capacity (.capacity ptr)
retval (make-empty-pointer-of-type (dtype/get-datatype ptr))]
(.set ^Field address-field retval addr)
(.set ^Field position-field retval pos)
(.set ^Field limit-field retval limit)
(.set ^Field capacity-field retval capacity)
retval))
(defn set-pointer-limit-and-capacity
^Pointer [^Pointer ptr ^long elem-count]
(.set ^Field limit-field ptr elem-count)
(.set ^Field capacity-field ptr elem-count)
ptr)
(defn release-pointer
[^Pointer ptr]
(.close ptr)
(.deallocate ptr false)
(.set ^Field deallocator-field ptr nil))
(defn as-buffer
"Get a nio buffer from the pointer to use in other places. Note this
function is threadsafe while a raw .asBuffer call is not!!!
https://github.com/bytedeco/javacpp/issues/155"
[^Pointer ptr]
(.asBuffer (duplicate-pointer ptr)))
(extend-type Pointer
resource/PResource
(release-resource [ptr] (release-pointer ptr))
dtype-base/PAccess
(set-value! [ptr ^long offset value] (dtype-base/set-value! (as-buffer ptr) offset value))
(set-constant! [ptr offset value elem-count]
(dtype-base/set-constant! (as-buffer ptr) offset value elem-count))
(get-value [ptr ^long offset] (dtype-base/get-value (as-buffer ptr) offset))
mp/PElementCount
(element-count [ptr] (.capacity ptr))
marshal/PContainerType
(container-type [ptr] :javacpp-ptr))
(marshal/add-conversion-fn :javacpp-ptr :nio-buffer
(fn [src-data src-offset]
[(as-buffer src-data) src-offset]))