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Teichmann Group

Sarah Teichmann's group at EMBL-EBI / Wellcome Trust Sanger Institute

157 followers
Cambridge, UK
http://www.teichlab.org

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scg_lib_structs scg_lib_structs Public

Collections of library structure and sequence of popular single cell genomic methods

HTML 391 86
cellphonedb cellphonedb Public archive

Python 337 105
bbknn bbknn Public

Batch balanced KNN

Python 136 23
MultiMAP MultiMAP Public

MultiMAP for integration of single cell multi-omics

Python 51 11
embl-single-cell-course-2016 embl-single-cell-course-2016 Public

Material for lecture at the EMBL Single Cell Course 2016

Jupyter Notebook 45 16

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Showing 10 of 61 repositories

vascular_atlas Public
Repo with analysis code for the vascular atlas paper

Jupyter Notebook 0 0 0 0 Updated May 29, 2024
COVID-19paed Public

R 2 2 2 0 Updated May 22, 2024
multi-view-atlas Public
Multi-view objects for annotation and mapping to single-cell atlases

Jupyter Notebook 0 BSD-3-Clause 1 13 2 Updated May 21, 2024
bin2cell Public
Join subcellular Visium HD bins into cells

Jupyter Notebook 4 MIT 0 0 0 Updated May 16, 2024
G2G_notebooks Public
Analysis notebooks for G2G MS

Jupyter Notebook 1 0 0 0 Updated May 13, 2024
SpatialDE Public
Test genes for Spatial Variation

Jupyter Notebook 138 MIT 51 14 5 Updated May 7, 2024
celltypist_wiki Public
Materials and scripts for building cell type encyclopedia table

Python 12 2 0 0 Updated May 2, 2024
scg_lib_structs Public
Collections of library structure and sequence of popular single cell genomic methods

HTML 391 86 1 0 Updated May 1, 2024
lung-immune-cell-atlas Public
This is a folder containing information of the human fetal lung leukocyte atlas

HTML 2 1 0 0 Updated Apr 23, 2024
celltypist Public
A tool for semi-automatic cell type classification

Python 246 MIT 39 12 1 Updated Apr 22, 2024

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single-cell python scrna-seq machine-learning

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