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Error: Result is empty #127

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Matthias3033 opened this issue Oct 25, 2019 · 4 comments
Closed

Error: Result is empty #127

Matthias3033 opened this issue Oct 25, 2019 · 4 comments

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@Matthias3033
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Hi,
when I run the statistical analysis in cellphonedb, I get the following error message: Result is empty. My data comes from an anndata object out of scanpy. Many thanks in advance for your help.

Technical data:
Windows 10
Python 3.6.8
Cellphonedb v.2.0.0

@Matthias3033 Matthias3033 changed the title Error: Result ist empty Error: Result is empty Oct 25, 2019
@mvento
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mvento commented Oct 31, 2019

Hi @Matthias3033 can you send the input files?

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@Matthias3033
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Matthias3033 commented Nov 5, 2019

Hi @mvento,

here is an excerpt of my used data
Data_cellphonedb.zip

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@Matthias3033
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Hi @mvento,

I was able to solve the problem by converting the gen names to ens ids.

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@ruohuchengxhe
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Hi @mvento,

I was able to solve the problem by converting the gen names to ens ids.

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Hi Matthias! Good to know you converted gen names to ens ids. I was not able to do this. May I ask how did you convert them? Thanks you!
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