Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Train Custom Model on scATAC-seq data? #49

Closed
jacklynnewsome opened this issue Dec 2, 2022 · 2 comments
Closed

Train Custom Model on scATAC-seq data? #49

jacklynnewsome opened this issue Dec 2, 2022 · 2 comments

Comments

@jacklynnewsome
Copy link

Hello,

Is it at all possible to train a custom celltypist model on scATAC-seq data and then use it for predicting cell types in scATAC-seq datasets? I've been trying accomplish this, but so far it seems incompatible, despite my efforts.
@ChuanXu1
Copy link
Collaborator

ChuanXu1 commented Dec 6, 2022

@jacklynnewsome, this should work if you provide the abundance matrix to CellTypist for training. You can detail the error here if it fails

@ChuanXu1
Copy link
Collaborator

I will close this issue. Please re-open it if you still have problems dealing with this.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
2 participants
@jacklynnewsome @ChuanXu1