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mkdocs.yml
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mkdocs.yml
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site_name: CLIMB-BIG-DATA Documentation
theme:
name: material
features:
- navigation.sections
- navigation.expand
- navigation.path
- navigation.top
- navigation.indexes
- toc.integrate
- search.suggest
- search.highlight
- content.tabs.link
- content.code.annotation
- content.code.copy
language: en
palette:
- scheme: default
toggle:
icon: material/toggle-switch-off-outline
name: Switch to dark mode
primary: indigo
accent: amber
- scheme: slate
toggle:
icon: material/toggle-switch
name: Switch to light mode
markdown_extensions:
- attr_list
- toc:
permalink: "#"
- admonition
- pymdownx.details
- pymdownx.superfences
copyright: |
© CLIMB-BIG-DATA 2023
nav:
- "Overview": "index.md"
- "Getting started":
- "How to Register": "getting-started/how-to-register.md"
- "Authentication": "getting-started/authentication.md"
- "Notebook Servers":
- notebook-servers/index.md
- "Read This First!": "notebook-servers/read-this-first.md"
- "Quick start": "notebook-servers/quick-start.md"
- "Using the interface": "notebook-servers/using-interface.md"
- "Using the terminal": "notebook-servers/using-the-terminal.md"
- "Using Jupyter notebooks": "notebook-servers/using-jupyter.md"
- "Using RStudio": "notebook-servers/using-rstudio.md"
- "Understanding storage": "storage/index.md"
- "Installing software with Conda": "notebook-servers/installing-software-with-conda.md"
- "Using Nextflow": "notebook-servers/using-nextflow.md"
- "Using Visual Studio Code": "notebook-servers/using-vscode.md"
- "403 Forbidden Error": "notebook-servers/403-forbidden-error.md"
- "Walkthroughs":
- "Metagenomics": "walkthroughs/metagenomics-tutorial.md"
- "Genome assembly": "walkthroughs/genome-assembly/spades.md"
- "Custom Nextflow Workflows": "walkthroughs/nextflow-custom-workflows/nextflow-custom.md"
- "QIIME 2": "walkthroughs/qiime2.md"
- "nf-core pipelines": "walkthroughs/nfcore.md"