Dendroscope3 is a Java program for analyzing and visualizing rooted phylogenetic trees and networks.
Dendroscope3 requires jloda.
Publication: Daniel H. Huson and Celine Scornavacca, Dendroscope 3: An Interactive Tool for Rooted Phylogenetic Trees and Networks, Syst Biol first published online July 10, 2012 doi:10.1093/sysbio/sys062