options-20240302.yaml

document: processing options and data sources
tip: options can be ordered (top is default) and commented out (if only one remains the user will not be prompted)
options: 
  interactive: # also possible to add 'noninteractive' argument in command line
    - True
    - False
  sigmas: 
    - 0
    - 50
    - 500
    - 1000
  skipuvbp:
    - False
    - True
  methods: 
    - color
    - pca
    - mnf
    - fica
    #- kpca  
    #- specembed
    #- cca
  n_components: 
    - max
    #- 1
    #- 2
    #- 3 # this can be problematic if don't want assumed to be rgb
    - 5
    - 10
output: 
  histograms: 
    - equalize
    - adaptive
    #- rescale
    #- none
  multilayer:
    - separate files
    #- stack
  fileformats: 
    - jpg
    - tif
    #- png
settings:
  fica_max_iter: 1000 # default is 100, 100000 took days, 10000 took about 4 hours
  fica_tol: 0.0001 # default is 0.0001, 0.00001 took days, .001 fails with error, 0.01 still took a while and sometimes fails at 10k iterations
  cachepath: /storage/JubPalProj/cache/
  logfile: /home/thanneken/logs/jubpalprocess.log
  color:
    illuminant: D65
basepaths: 
  - /storage/JubPalProj/AmbrosianaArchive/Ambrosiana_C73inf/
  - /storage/JubPalProj/Hereford/Hereford_Gospels/
  - /storage/JubPalProj/Ambrosiana2023/Ambrosiana_F130sup/
  - /storage/JubPalProj/Videntes/BritishLibrary_AddMS10049/
  - /storage/JubPalProj/Videntes/Unknown_MappaMundi/
  - /storage/JubPalProj/Lazarus/Triv_Dante/
  - /storage/JubPalProj/Lazarus/Triv_PsalterArmorial/
# - /storage/JubPalProj/AmbrosianaArchive/Ambrosiana_F130sup/
# - /storage/JubPalProj/AmbrosianaArchive/Ambrosiana_O39sup/
# - /storage/JubPalProj/AmbrosianaArchive/Ambrosiana_A79inf/
# - /home/thanneken/Projects/
# projects have been moved to yaml files in each basepath